Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CALML5 221 81 32 20 1 0 0.857 0.314 0.124 0.078 0.004 0.000 chr10 5493697 5504570
CALML6 196 58 50 36 0 0 0.760 0.225 0.194 0.140 0.000 0.000 chr1 1910260 1922296
CALN1 71 8 93 44 0 0 0.275 0.031 0.360 0.171 0.000 0.000 chr7 71774491 72417338
CALR3 184 57 62 37 0 0 0.713 0.221 0.240 0.143 0.000 0.000 chr19 16474061 16501167
CALR 174 47 80 55 0 0 0.674 0.182 0.310 0.213 0.000 0.000 chr19 12933609 12949489
CALU 168 42 71 48 0 0 0.651 0.163 0.275 0.186 0.000 0.000 chr7 128734359 128778400
CALY 124 28 95 52 0 0 0.481 0.109 0.368 0.202 0.000 0.000 chr10 133319072 133341896
CAMK1D 107 23 53 27 0 0 0.415 0.089 0.205 0.105 0.000 0.000 chr10 12344547 12840545
CAMK1G 222 79 30 21 1 1 0.860 0.306 0.116 0.081 0.004 0.004 chr1 209578714 209618939
CAMK1 212 81 42 22 1 0 0.822 0.314 0.163 0.085 0.004 0.000 chr3 9752347 9774947
CAMK2A 168 48 67 40 0 0 0.651 0.186 0.260 0.155 0.000 0.000 chr5 150214491 150294773
CAMK2B 120 22 77 53 0 0 0.465 0.085 0.298 0.205 0.000 0.000 chr7 44212154 44330594
CAMK2D 138 45 68 37 0 0 0.535 0.174 0.264 0.143 0.000 0.000 chr4 113446032 113766738
CAMK2G 139 53 102 42 0 0 0.539 0.205 0.395 0.163 0.000 0.000 chr10 73807501 73879555
CAMK2N1 210 73 43 29 2 1 0.814 0.283 0.167 0.112 0.008 0.004 chr1 20477391 20491210
CAMK2N2 189 58 67 46 1 0 0.733 0.225 0.260 0.178 0.004 0.000 chr3 184254213 184266553
CAMK4 122 23 84 58 0 0 0.473 0.089 0.326 0.225 0.000 0.000 chr5 111219384 111499886
CAMKK1 222 75 30 25 0 0 0.860 0.291 0.116 0.097 0.000 0.000 chr17 3855315 3898053
CAMKK2 164 46 65 37 0 0 0.636 0.178 0.252 0.143 0.000 0.000 chr12 121232692 121301709
CAMKMT 99 24 90 47 0 0 0.384 0.093 0.349 0.182 0.000 0.000 chr2 44356947 44777592
CAMKV 168 44 79 53 1 0 0.651 0.171 0.306 0.205 0.004 0.000 chr3 49852989 49874906
CAMLG 183 63 66 35 0 0 0.709 0.244 0.256 0.136 0.000 0.000 chr5 134733548 134757157
CAMP 172 52 81 49 1 0 0.667 0.202 0.314 0.190 0.004 0.000 chr3 48218495 48230485
CAMSAP1 169 48 60 38 0 0 0.655 0.186 0.233 0.147 0.000 0.000 chr9 135803487 135912546
CAMSAP2 182 64 64 33 0 0 0.705 0.248 0.248 0.128 0.000 0.000 chr1 200733893 200865704
CAMSAP3 178 49 67 44 0 0 0.690 0.190 0.260 0.171 0.000 0.000 chr19 7590863 7623304
CAMTA1 29 1 85 32 0 0 0.112 0.004 0.329 0.124 0.000 0.000 chr1 6780454 7774706
CAMTA2 189 68 59 30 2 1 0.733 0.264 0.229 0.116 0.008 0.004 chr17 4962997 4992675
CAND1 163 57 81 39 0 0 0.632 0.221 0.314 0.151 0.000 0.000 chr12 67264358 67324953
CAND2 188 57 55 35 0 0 0.729 0.221 0.213 0.136 0.000 0.000 chr3 12791680 12839803
CANT1 196 71 52 25 0 0 0.760 0.275 0.202 0.097 0.000 0.000 chr17 78986716 79014764
CANX 189 70 57 29 1 1 0.733 0.271 0.221 0.112 0.004 0.004 chr5 179693967 179736641
CAP1 188 69 63 33 0 0 0.729 0.267 0.244 0.128 0.000 0.000 chr1 40035729 40077648
CAP2 102 18 97 57 0 0 0.395 0.070 0.376 0.221 0.000 0.000 chr6 17388595 17562780
CAPG 204 69 50 34 1 1 0.791 0.267 0.194 0.132 0.004 0.004 chr2 85389753 85415366
CAPN10 205 65 53 40 0 0 0.795 0.252 0.205 0.155 0.000 0.000 chr2 240581734 240604104
CAPN11 229 84 27 19 0 0 0.888 0.326 0.105 0.074 0.000 0.000 chr6 44153820 44189401
CAPN12 170 50 73 43 0 0 0.659 0.194 0.283 0.167 0.000 0.000 chr19 38725192 38749474
CAPN13 191 64 45 29 0 0 0.740 0.248 0.174 0.112 0.000 0.000 chr2 30717771 30812446
CAPN14 162 44 70 39 0 0 0.628 0.171 0.271 0.151 0.000 0.000 chr2 31168056 31222515
CAPN15 204 62 36 27 0 0 0.791 0.240 0.140 0.105 0.000 0.000 chr16 522712 559636
CAPN1 196 69 55 30 0 0 0.760 0.267 0.213 0.116 0.000 0.000 chr11 65176928 65217006
CAPN2 188 62 48 26 0 0 0.729 0.240 0.186 0.101 0.000 0.000 chr1 223707539 223781018
CAPN3 152 41 87 52 0 0 0.589 0.159 0.337 0.202 0.000 0.000 chr15 42354501 42417317
CAPN5 190 57 39 30 0 0 0.736 0.221 0.151 0.116 0.000 0.000 chr11 77061971 77131155
CAPN6 55 9 195 89 0 0 0.213 0.035 0.756 0.345 0.000 0.000 chrX 111240099 111275483
CAPN7 187 63 64 38 0 0 0.725 0.244 0.248 0.147 0.000 0.000 chr3 15201246 15257916
CAPN8 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr1 223536616 223670701
CAPN9 196 65 44 29 0 0 0.760 0.252 0.171 0.112 0.000 0.000 chr1 230742388 230806989
CAPNS1 239 91 18 13 0 0 0.926 0.353 0.070 0.050 0.000 0.000 chr19 36135066 36155353