Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CD160 169 58 77 39 1 0 0.655 0.225 0.298 0.151 0.004 0.000 chr1 145714499 145744288
view CD163L1 191 68 46 26 0 0 0.740 0.264 0.178 0.101 0.000 0.000 chr12 7349960 7449153
view CD163 213 81 34 16 0 0 0.826 0.314 0.132 0.062 0.000 0.000 chr12 7465811 7508777
view CD164L2 176 51 80 52 0 0 0.682 0.198 0.310 0.202 0.000 0.000 chr1 27374176 27388333
view CD164 223 86 32 16 1 1 0.864 0.333 0.124 0.062 0.004 0.004 chr6 109361514 109387467
view CD177 232 87 25 17 0 0 0.899 0.337 0.097 0.066 0.000 0.000 chr19 43348686 43368172
view CD180 203 71 52 32 0 0 0.787 0.275 0.202 0.124 0.000 0.000 chr5 67174613 67201799
view CD19 199 75 52 25 0 0 0.771 0.291 0.202 0.097 0.000 0.000 chr16 28926971 28944342
view CD1A 222 85 35 20 0 0 0.860 0.329 0.136 0.078 0.000 0.000 chr1 158249424 158263269
view CD1B 220 83 36 21 2 1 0.853 0.322 0.140 0.081 0.008 0.004 chr1 158322955 158336531
view CD1C 222 83 36 22 0 0 0.860 0.322 0.140 0.085 0.000 0.000 chr1 158284923 158299774
view CD1D 216 82 39 22 1 1 0.837 0.318 0.151 0.085 0.004 0.004 chr1 158175895 158191427
view CD1E 217 82 40 22 0 0 0.841 0.318 0.155 0.085 0.000 0.000 chr1 158348894 158362553
view CD200R1L 203 72 46 27 0 0 0.787 0.279 0.178 0.105 0.000 0.000 chr3 112810711 112851864
view CD200R1 207 74 43 25 0 0 0.802 0.287 0.167 0.097 0.000 0.000 chr3 112916205 112980103
view CD200 203 68 46 30 0 0 0.787 0.264 0.178 0.116 0.000 0.000 chr3 112328156 112367812
view CD207 221 85 34 17 0 0 0.857 0.329 0.132 0.066 0.000 0.000 chr2 70825211 70840816
view CD209 226 82 24 17 2 0 0.876 0.318 0.093 0.066 0.008 0.000 chr19 7734993 7752534
view CD226 127 20 86 58 0 0 0.492 0.078 0.333 0.225 0.000 0.000 chr18 69848274 69952873
view CD22 228 82 24 17 0 0 0.884 0.318 0.093 0.066 0.000 0.000 chr19 35324187 35352361
view CD244 201 75 51 28 0 0 0.779 0.291 0.198 0.109 0.000 0.000 chr1 160825160 160867887
view CD247 186 57 42 28 0 0 0.721 0.221 0.163 0.109 0.000 0.000 chr1 167425640 167523529
view CD248 205 73 49 29 1 1 0.795 0.283 0.190 0.112 0.004 0.004 chr11 66309494 66322044
view CD24 230 89 27 15 0 0 0.891 0.345 0.105 0.058 0.000 0.000 chr6 106964831 106979729
view CD274 212 71 38 27 0 0 0.822 0.275 0.147 0.105 0.000 0.000 chr9 5445542 5475554
view CD276 191 63 52 30 0 0 0.740 0.244 0.202 0.116 0.000 0.000 chr15 73679383 73719514
view CD27 235 88 18 13 2 1 0.911 0.341 0.070 0.050 0.008 0.004 chr12 6439955 6456713
view CD28 194 68 56 31 0 0 0.752 0.264 0.217 0.120 0.000 0.000 chr2 203701639 203743912
view CD2AP 160 53 88 46 0 0 0.620 0.205 0.341 0.178 0.000 0.000 chr6 47472789 47632263
view CD2BP2 175 44 78 56 1 1 0.678 0.171 0.302 0.217 0.004 0.004 chr16 30345773 30360308
view CD2 227 90 29 14 1 0 0.880 0.349 0.112 0.054 0.004 0.000 chr1 116749430 116774229
view CD300A 211 81 40 18 0 0 0.818 0.314 0.155 0.070 0.000 0.000 chr17 74461634 74489794
view CD300C 203 64 52 38 0 0 0.787 0.248 0.202 0.147 0.000 0.000 chr17 74536073 74551115
view CD300E 224 84 28 17 0 0 0.868 0.326 0.109 0.066 0.000 0.000 chr17 74604885 74628738
view CD300LB 202 65 52 37 1 1 0.783 0.252 0.202 0.143 0.004 0.004 chr17 74516174 74536475
view CD300LD 219 80 35 22 0 0 0.849 0.310 0.136 0.085 0.000 0.000 chr17 74574365 74597283
view CD300LF 213 76 37 23 1 1 0.826 0.295 0.143 0.089 0.004 0.004 chr17 74689317 74717923
view CD300LG 149 25 94 67 0 0 0.578 0.097 0.364 0.260 0.000 0.000 chr17 43842176 43868639
view CD302 206 84 50 19 0 0 0.798 0.326 0.194 0.074 0.000 0.000 chr2 159763628 159803208
view CD320 194 61 61 42 0 0 0.752 0.236 0.236 0.163 0.000 0.000 chr19 8297127 8313358
view CD33 182 50 69 49 1 0 0.705 0.194 0.267 0.190 0.004 0.000 chr19 51220080 51245016
view CD34 209 75 44 27 0 0 0.810 0.291 0.171 0.105 0.000 0.000 chr1 207875972 207916125
view CD36 195 68 51 29 0 0 0.756 0.264 0.198 0.112 0.000 0.000 chr7 80633642 80684274
view CD37 190 64 63 36 0 0 0.736 0.248 0.244 0.140 0.000 0.000 chr19 49330406 49345606
view CD38 171 62 73 36 1 1 0.663 0.240 0.283 0.140 0.004 0.004 chr4 15773328 15858232
view CD3D 215 76 37 24 1 1 0.833 0.295 0.143 0.093 0.004 0.004 chr11 118334075 118347705
view CD3E 207 74 50 30 0 0 0.802 0.287 0.194 0.116 0.000 0.000 chr11 118299730 118321173
view CD3G 220 75 33 25 0 0 0.853 0.291 0.128 0.097 0.000 0.000 chr11 118339344 118360161
view CD40LG 78 15 176 86 0 0 0.302 0.058 0.682 0.333 0.000 0.000 chrX 136643158 136665390
view CD40 207 72 48 30 1 1 0.802 0.279 0.186 0.116 0.004 0.004 chr20 46113314 46134858