Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CDC26 215 80 41 23 1 1 0.833 0.310 0.159 0.089 0.004 0.004 chr9 113261992 113280572
view CDC27 178 56 66 40 0 0 0.690 0.217 0.256 0.155 0.000 0.000 chr17 47112703 47194295
view CDC34 163 50 76 38 0 0 0.632 0.194 0.295 0.147 0.000 0.000 chr19 526760 547087
view CDC37L1 209 79 41 20 0 0 0.810 0.306 0.159 0.078 0.000 0.000 chr9 4674569 4713399
view CDC37 193 62 60 40 1 0 0.748 0.240 0.233 0.155 0.004 0.000 chr19 10386133 10408542
view CDC40 164 56 76 39 0 0 0.636 0.217 0.295 0.151 0.000 0.000 chr6 110175427 110237232
view CDC42BPA 175 50 62 41 0 0 0.678 0.194 0.240 0.159 0.000 0.000 chr1 226984865 227323492
view CDC42BPB 159 45 65 42 0 0 0.616 0.174 0.252 0.163 0.000 0.000 chr14 102927380 103062549
view CDC42BPG 201 70 49 29 0 0 0.779 0.271 0.190 0.112 0.000 0.000 chr11 64818052 64849653
view CDC42EP1 223 83 29 18 0 0 0.864 0.322 0.112 0.070 0.000 0.000 chr22 37555480 37574405
view CDC42EP2 168 46 80 50 0 0 0.651 0.178 0.310 0.194 0.000 0.000 chr11 65309866 65327417
view CDC42EP3 214 75 37 23 0 0 0.829 0.291 0.143 0.089 0.000 0.000 chr2 37636944 37676642
view CDC42EP4 203 63 40 30 0 0 0.787 0.244 0.155 0.116 0.000 0.000 chr17 73278624 73317001
view CDC42EP5 210 69 42 30 0 0 0.814 0.267 0.163 0.116 0.000 0.000 chr19 54460026 54478296
view CDC42SE1 170 52 80 48 1 1 0.659 0.202 0.310 0.186 0.004 0.004 chr1 151045985 151064622
view CDC42SE2 127 27 90 50 0 0 0.492 0.105 0.349 0.194 0.000 0.000 chr5 131259053 131399672
view CDC42 175 54 68 41 0 0 0.678 0.209 0.264 0.159 0.000 0.000 chr1 22047709 22106360
view CDC45 207 82 41 17 0 0 0.802 0.318 0.159 0.066 0.000 0.000 chr22 19474920 19525608
view CDC5L 175 71 60 27 0 0 0.678 0.275 0.233 0.105 0.000 0.000 chr6 44382706 44455425
view CDC6 164 58 84 41 0 0 0.636 0.225 0.326 0.159 0.000 0.000 chr17 40282879 40309657
view CDC73 136 45 99 51 0 0 0.527 0.174 0.384 0.198 0.000 0.000 chr1 193117031 193259815
view CDC7 196 67 51 31 0 0 0.760 0.260 0.198 0.120 0.000 0.000 chr1 91495851 91530764
view CDCA2 162 53 81 44 0 0 0.628 0.205 0.314 0.171 0.000 0.000 chr8 25454233 25512911
view CDCA3 197 64 59 39 0 0 0.764 0.248 0.229 0.151 0.000 0.000 chr12 6843828 6856286
view CDCA4 205 79 50 23 0 0 0.795 0.306 0.194 0.089 0.000 0.000 chr14 105004573 105026083
view CDCA5 179 49 73 50 0 0 0.694 0.190 0.283 0.194 0.000 0.000 chr11 65072453 65089040
view CDCA7L 215 75 38 27 0 0 0.833 0.291 0.147 0.105 0.000 0.000 chr7 21895899 21950899
view CDCA7 229 86 29 19 0 0 0.888 0.333 0.112 0.074 0.000 0.000 chr2 173349872 173373997
view CDCA8 205 69 49 32 0 0 0.795 0.267 0.190 0.124 0.000 0.000 chr1 37687516 37714719
view CDCP1 191 55 45 33 0 0 0.740 0.213 0.174 0.128 0.000 0.000 chr3 45077277 45151378
view CDCP2 215 71 36 28 1 1 0.833 0.275 0.140 0.109 0.004 0.004 chr1 54127687 54158000
view CDH10 144 42 66 38 0 0 0.558 0.163 0.256 0.147 0.000 0.000 chr5 24482100 24649978
view CDH11 153 44 71 43 0 0 0.593 0.171 0.275 0.167 0.000 0.000 chr16 64938753 65127063
view CDH12 30 1 100 45 0 0 0.116 0.004 0.388 0.174 0.000 0.000 chr5 21745673 22858344
view CDH13 55 0 75 37 0 0 0.213 0.000 0.291 0.143 0.000 0.000 chr16 82621969 83805640
view CDH15 202 66 44 29 1 1 0.783 0.256 0.171 0.112 0.004 0.004 chr16 89166748 89200492
view CDH16 192 63 55 35 0 0 0.744 0.244 0.213 0.136 0.000 0.000 chr16 66903122 66923885
view CDH17 168 45 59 37 0 0 0.651 0.174 0.229 0.143 0.000 0.000 chr8 94122162 94213555
view CDH18 68 2 106 59 0 0 0.264 0.008 0.411 0.229 0.000 0.000 chr5 19466296 19993200
view CDH19 176 64 56 27 0 0 0.682 0.248 0.217 0.105 0.000 0.000 chr18 66496083 66609090
view CDH1 157 38 67 47 0 0 0.609 0.147 0.260 0.182 0.000 0.000 chr16 68732292 68840537
view CDH20 139 32 57 34 0 0 0.539 0.124 0.221 0.132 0.000 0.000 chr18 61328430 61560779
view CDH22 158 38 55 34 0 0 0.612 0.147 0.213 0.132 0.000 0.000 chr20 46168739 46313498
view CDH23 97 17 75 47 0 0 0.376 0.066 0.291 0.182 0.000 0.000 chr10 71391920 71820947
view CDH24 206 73 45 26 1 0 0.798 0.283 0.174 0.101 0.004 0.000 chr14 23042067 23062520
view CDH26 143 37 84 49 0 0 0.554 0.143 0.326 0.190 0.000 0.000 chr20 59953423 60019529
view CDH2 133 30 79 57 0 0 0.516 0.116 0.306 0.221 0.000 0.000 chr18 27945966 28182130
view CDH3 168 50 71 44 0 0 0.651 0.194 0.275 0.171 0.000 0.000 chr16 68640310 68705292
view CDH4 53 3 76 36 0 0 0.205 0.012 0.295 0.140 0.000 0.000 chr20 61247261 61945617
view CDH5 201 65 44 32 0 0 0.779 0.252 0.171 0.124 0.000 0.000 chr16 66361691 66409784