Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CLCC1 196 64 52 35 0 0 0.760 0.248 0.202 0.136 0.000 0.000 chr1 108924505 108968484
CLCF1 153 39 102 63 1 1 0.593 0.151 0.395 0.244 0.004 0.004 chr11 67359168 67378598
CLCN1 206 64 38 30 0 0 0.798 0.248 0.147 0.116 0.000 0.000 chr7 143311111 143357083
CLCN2 229 83 27 20 0 0 0.888 0.322 0.105 0.078 0.000 0.000 chr3 184341185 184366605
CLCN3 143 31 102 67 0 0 0.554 0.120 0.395 0.260 0.000 0.000 chr4 169615578 169728673
CLCN4 69 13 175 80 0 0 0.267 0.050 0.678 0.310 0.000 0.000 chrX 10151975 10242660
CLCN5 23 0 219 97 0 0 0.089 0.000 0.849 0.376 0.000 0.000 chrX 49917596 50104230
CLCN6 144 35 100 59 0 0 0.558 0.136 0.388 0.229 0.000 0.000 chr1 11801191 11848130
CLCN7 201 60 45 34 0 0 0.779 0.233 0.174 0.132 0.000 0.000 chr16 1439935 1480028
CLCNKA 195 59 50 34 2 1 0.756 0.229 0.194 0.132 0.008 0.004 chr1 16017036 16039050
CLCNKB 213 64 42 39 0 0 0.826 0.248 0.163 0.151 0.000 0.000 chr1 16038782 16062308
CLC 220 82 36 23 0 0 0.853 0.318 0.140 0.089 0.000 0.000 chr19 39726255 39743029
CLDN10 199 74 56 29 0 0 0.771 0.287 0.217 0.112 0.000 0.000 chr13 95547720 95584759
CLDN11 203 71 49 29 0 0 0.787 0.275 0.190 0.112 0.000 0.000 chr3 170413868 170439691
CLDN12 206 68 48 35 0 0 0.798 0.264 0.186 0.136 0.000 0.000 chr7 90398461 90420954
CLDN14 211 74 44 29 0 0 0.818 0.287 0.171 0.112 0.000 0.000 chr21 36455621 36485122
CLDN15 200 69 52 32 0 0 0.775 0.267 0.202 0.124 0.000 0.000 chr7 101227094 101242802
CLDN16 218 79 38 25 0 0 0.845 0.306 0.147 0.097 0.000 0.000 chr3 190383163 190417138
CLDN17 217 79 38 24 1 0 0.841 0.306 0.147 0.093 0.004 0.000 chr21 30160565 30171805
CLDN18 196 63 60 40 0 0 0.760 0.244 0.233 0.155 0.000 0.000 chr3 138005165 138038649
CLDN19 213 77 43 28 0 0 0.826 0.298 0.167 0.109 0.000 0.000 chr1 42728093 42745236
CLDN1 233 84 21 17 0 0 0.903 0.326 0.081 0.066 0.000 0.000 chr3 190300707 190327446
CLDN20 191 63 58 37 0 0 0.740 0.244 0.225 0.143 0.000 0.000 chr6 155259013 155281548
CLDN22 222 80 34 23 1 1 0.860 0.310 0.132 0.089 0.004 0.004 chr4 183313100 183325276
CLDN23 218 79 38 25 2 1 0.845 0.306 0.147 0.097 0.008 0.004 chr8 8696937 8709096
CLDN24 222 79 32 22 2 2 0.860 0.306 0.124 0.085 0.008 0.008 chr4 183316764 183327426
CLDN25 216 82 41 22 0 0 0.837 0.318 0.159 0.085 0.000 0.000 chr11 113774796 113785485
CLDN2 62 8 186 88 0 0 0.240 0.031 0.721 0.341 0.000 0.000 chrX 106915402 106935861
CLDN34 104 33 147 66 0 0 0.403 0.128 0.570 0.256 0.000 0.000 chrX 9962358 9973352
CLDN3 204 62 52 42 0 0 0.791 0.240 0.202 0.163 0.000 0.000 chr7 73763997 73775270
CLDN4 185 57 66 43 2 0 0.717 0.221 0.256 0.167 0.008 0.000 chr7 73825996 73837690
CLDN5 220 82 34 20 1 0 0.853 0.318 0.132 0.078 0.004 0.000 chr22 19518027 19529410
CLDN6 211 66 40 32 1 1 0.818 0.256 0.155 0.124 0.004 0.004 chr16 3009712 3023183
CLDN7 208 71 46 30 0 0 0.806 0.275 0.178 0.116 0.000 0.000 chr17 7254903 7267478
CLDN8 232 86 25 19 1 0 0.899 0.333 0.097 0.074 0.004 0.000 chr21 30209006 30221097
CLDN9 213 70 38 28 1 1 0.826 0.271 0.147 0.109 0.004 0.004 chr16 3007923 3019505
CLDND1 216 81 39 21 1 1 0.837 0.314 0.151 0.081 0.004 0.004 chr3 98510483 98527902
CLDND2 219 74 35 27 0 0 0.849 0.287 0.136 0.105 0.000 0.000 chr19 51362098 51374003
CLEC10A 228 86 25 14 0 0 0.884 0.333 0.097 0.054 0.000 0.000 chr17 7069537 7085251
CLEC11A 186 50 67 51 1 0 0.721 0.194 0.260 0.198 0.004 0.000 chr19 50718364 50730708
CLEC12A 219 85 37 18 1 1 0.849 0.329 0.143 0.070 0.004 0.004 chr12 9966409 9990595
CLEC12B 232 91 20 10 1 0 0.899 0.353 0.078 0.039 0.004 0.000 chr12 10005627 10023796
CLEC14A 205 70 53 35 0 0 0.795 0.271 0.205 0.136 0.000 0.000 chr14 38249000 38261093
CLEC16A 136 29 77 48 0 0 0.527 0.112 0.298 0.186 0.000 0.000 chr16 10939564 11187186
CLEC17A 181 50 55 36 0 0 0.702 0.194 0.213 0.140 0.000 0.000 chr19 14578084 14617035
CLEC18A 189 61 44 29 19 10 0.733 0.236 0.171 0.112 0.074 0.039 chr16 69946334 69968986
CLEC18B 143 59 27 23 84 19 0.554 0.229 0.105 0.089 0.326 0.074 chr16 74403631 74426478
CLEC18C 177 47 66 49 5 1 0.686 0.182 0.256 0.190 0.019 0.004 chr16 70168787 70191895
CLEC19A 212 78 41 24 0 0 0.822 0.302 0.159 0.093 0.000 0.000 chr16 19280731 19315947
CLEC1A 191 65 58 35 0 0 0.740 0.252 0.225 0.136 0.000 0.000 chr12 10064554 10103985