Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CLEC1B 230 89 27 15 0 0 0.891 0.345 0.105 0.058 0.000 0.000 chr12 9988075 10004121
CLEC20A 156 36 93 60 0 0 0.605 0.140 0.360 0.233 0.000 0.000 chr1 178474240 178501964
CLEC2A 217 79 34 21 0 0 0.841 0.306 0.132 0.081 0.000 0.000 chr12 9908227 9937370
CLEC2B 226 83 30 20 1 1 0.876 0.322 0.116 0.078 0.004 0.004 chr12 9847369 9874354
CLEC2D 193 64 59 38 0 0 0.748 0.248 0.229 0.147 0.000 0.000 chr12 9664713 9704553
CLEC2L 153 37 76 46 0 0 0.593 0.143 0.295 0.178 0.000 0.000 chr7 139518685 139549985
CLEC3A 223 81 32 23 3 1 0.864 0.314 0.124 0.089 0.012 0.004 chr16 78017548 78037101
CLEC3B 187 57 67 45 0 0 0.725 0.221 0.260 0.174 0.000 0.000 chr3 45021303 45041071
CLEC4A 228 83 28 21 0 0 0.884 0.322 0.109 0.081 0.000 0.000 chr12 8118617 8143607
CLEC4C 223 83 30 18 0 0 0.864 0.322 0.116 0.070 0.000 0.000 chr12 7724383 7752375
CLEC4D 200 69 52 32 1 0 0.775 0.267 0.202 0.124 0.004 0.000 chr12 8508503 8527366
CLEC4E 220 81 34 20 0 0 0.853 0.314 0.132 0.078 0.000 0.000 chr12 8528305 8545905
CLEC4F 206 73 47 27 0 0 0.798 0.283 0.182 0.105 0.000 0.000 chr2 70803643 70825599
CLEC4G 215 74 41 29 0 0 0.833 0.287 0.159 0.112 0.000 0.000 chr19 7723957 7737110
CLEC4M 229 86 26 17 1 0 0.888 0.333 0.101 0.066 0.004 0.000 chr19 7758243 7774605
CLEC5A 192 65 61 35 0 0 0.744 0.252 0.236 0.136 0.000 0.000 chr7 141922357 141951974
CLEC6A 166 49 75 43 0 0 0.643 0.190 0.291 0.167 0.000 0.000 chr12 8450962 8483330
CLEC7A 224 84 26 14 0 0 0.868 0.326 0.101 0.054 0.000 0.000 chr12 10111777 10135199
CLEC9A 202 78 47 23 0 0 0.783 0.302 0.182 0.089 0.000 0.000 chr12 10025682 10071031
CLGN 178 56 68 42 0 0 0.690 0.217 0.264 0.163 0.000 0.000 chr4 140383453 140432648
CLHC1 201 77 49 25 0 0 0.779 0.298 0.190 0.097 0.000 0.000 chr2 55167547 55237293
CLIC1 197 61 56 40 1 0 0.764 0.236 0.217 0.155 0.004 0.000 chr6 31725599 31741530
CLIC2 64 11 183 86 0 0 0.248 0.043 0.709 0.333 0.000 0.000 chrX 155271211 155339614
CLIC3 198 65 50 30 0 0 0.767 0.252 0.194 0.116 0.000 0.000 chr9 136989608 137001568
CLIC4 171 59 68 37 0 0 0.663 0.229 0.264 0.143 0.000 0.000 chr1 24740447 24849321
CLIC5 169 55 53 28 0 0 0.655 0.213 0.205 0.109 0.000 0.000 chr6 45893456 46020860
CLIC6 155 37 80 56 0 0 0.601 0.143 0.310 0.217 0.000 0.000 chr21 34663994 34723223
CLINT1 169 54 78 46 0 0 0.655 0.209 0.302 0.178 0.000 0.000 chr5 157780747 157864145
CLIP1 116 25 94 52 0 0 0.450 0.097 0.364 0.202 0.000 0.000 chr12 122266469 122427669
CLIP2 138 27 75 49 0 0 0.535 0.105 0.291 0.190 0.000 0.000 chr7 74284407 74410935
CLIP3 207 68 43 32 0 0 0.802 0.264 0.167 0.124 0.000 0.000 chr19 36009660 36037873
CLIP4 145 39 96 53 0 0 0.562 0.151 0.372 0.205 0.000 0.000 chr2 29110415 29188808
CLK1 208 70 44 32 0 0 0.806 0.271 0.171 0.124 0.000 0.000 chr2 200848009 200869658
CLK2 165 54 87 48 0 0 0.640 0.209 0.337 0.186 0.000 0.000 chr1 155257868 155278504
CLK3 176 63 75 36 1 1 0.682 0.244 0.291 0.140 0.004 0.004 chr15 74610836 74635201
CLK4 191 67 58 34 1 0 0.740 0.260 0.225 0.132 0.004 0.000 chr5 178597664 178632050
CLMN 137 29 69 45 0 0 0.531 0.112 0.267 0.174 0.000 0.000 chr14 95176940 95324908
CLMP 126 26 84 56 0 0 0.488 0.101 0.326 0.217 0.000 0.000 chr11 123064872 123200248
CLN3 179 58 72 42 0 0 0.694 0.225 0.279 0.163 0.000 0.000 chr16 28472279 28497074
CLN5 214 83 43 22 0 0 0.829 0.322 0.167 0.085 0.000 0.000 chr13 76987081 77010117
CLN6 161 42 89 58 0 0 0.624 0.163 0.345 0.225 0.000 0.000 chr15 68201992 68234728
CLN8 206 70 47 32 0 0 0.798 0.271 0.182 0.124 0.000 0.000 chr8 1758789 1791570
CLNK 159 49 57 33 0 0 0.616 0.190 0.221 0.128 0.000 0.000 chr4 10481395 10689768
CLNS1A 203 71 48 28 0 0 0.787 0.275 0.186 0.109 0.000 0.000 chr11 77609530 77642794
CLOCK 168 52 81 46 0 0 0.651 0.202 0.314 0.178 0.000 0.000 chr4 55422903 55551909
CLP1 165 34 89 67 0 0 0.640 0.132 0.345 0.260 0.000 0.000 chr11 57652762 57666865
CLPB 102 23 112 59 0 0 0.395 0.089 0.434 0.229 0.000 0.000 chr11 72280495 72439531
CLPP 189 60 65 42 0 0 0.733 0.233 0.252 0.163 0.000 0.000 chr19 6356531 6375242
CLPSL1 221 79 33 22 1 1 0.857 0.306 0.128 0.085 0.004 0.004 chr6 35776019 35793150
CLPSL2 229 83 27 20 1 1 0.888 0.322 0.105 0.078 0.004 0.004 chr6 35771598 35784552