Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CXADR 175 49 60 35 0 0 0.678 0.190 0.233 0.136 0.000 0.000 chr21 17508043 17575100
CXCL10 211 77 46 28 0 0 0.818 0.298 0.178 0.109 0.000 0.000 chr4 76016118 76028497
CXCL11 210 85 45 19 1 0 0.814 0.329 0.174 0.074 0.004 0.000 chr4 76028682 76041070
CXCL12 220 80 37 24 0 0 0.853 0.310 0.143 0.093 0.000 0.000 chr10 44372067 44390097
CXCL13 182 54 72 47 0 0 0.705 0.209 0.279 0.182 0.000 0.000 chr4 77600820 77616834
CXCL14 200 65 56 38 0 0 0.775 0.252 0.217 0.147 0.000 0.000 chr5 135565679 135583991
CXCL16 218 77 32 20 0 0 0.845 0.298 0.124 0.078 0.000 0.000 chr17 4728533 4744928
CXCL17 183 59 69 42 0 0 0.709 0.229 0.267 0.163 0.000 0.000 chr19 42423278 42447946
CXCL1 223 88 35 17 0 0 0.864 0.341 0.136 0.066 0.000 0.000 chr4 73864393 73876308
CXCL2 198 73 55 30 1 1 0.767 0.283 0.213 0.116 0.004 0.004 chr4 74092040 74104195
CXCL3 191 71 63 31 1 1 0.740 0.275 0.244 0.120 0.004 0.004 chr4 74031589 74043689
CXCL5 194 65 62 39 1 0 0.752 0.252 0.240 0.151 0.004 0.000 chr4 73990642 74003677
CXCL6 221 83 35 21 1 0 0.857 0.322 0.136 0.081 0.004 0.000 chr4 73831678 73843760
CXCL8 194 69 60 35 0 0 0.752 0.267 0.233 0.136 0.000 0.000 chr4 73735569 73748716
CXCL9 217 86 40 19 1 0 0.841 0.333 0.155 0.074 0.004 0.000 chr4 75996275 76012509
CXCR1 171 47 85 56 1 1 0.663 0.182 0.329 0.217 0.004 0.004 chr2 218157841 218171962
CXCR2 181 57 75 47 0 0 0.702 0.221 0.291 0.182 0.000 0.000 chr2 218121028 218142251
CXCR3 98 35 155 66 1 0 0.380 0.136 0.601 0.256 0.004 0.000 chrX 71610919 71623511
CXCR4 202 66 50 36 3 0 0.783 0.256 0.194 0.140 0.012 0.000 chr2 136109349 136123149
CXCR5 183 42 71 61 1 1 0.709 0.163 0.275 0.236 0.004 0.004 chr11 118878892 118902787
CXCR6 209 87 48 17 0 0 0.810 0.337 0.186 0.066 0.000 0.000 chr3 45938464 45953351
CXXC1 210 68 44 33 0 0 0.814 0.264 0.171 0.128 0.000 0.000 chr18 50277347 50292692
CXXC4 165 52 86 50 0 0 0.640 0.202 0.333 0.194 0.000 0.000 chr4 104463308 104499894
CXXC5 132 22 103 66 0 0 0.512 0.085 0.399 0.256 0.000 0.000 chr5 139643349 139688882
CXorf38 87 21 169 83 0 0 0.337 0.081 0.655 0.322 0.000 0.000 chrX 40621921 40652561
CXorf49B 48 7 118 45 7 0 0.186 0.027 0.457 0.174 0.027 0.000 chrX 71758349 71772204
CXorf49 14 1 96 26 0 0 0.054 0.004 0.372 0.101 0.000 0.000 chrX 71709371 71723285
CXorf51A 84 19 142 62 2 0 0.326 0.074 0.550 0.240 0.008 0.000 chrX 146809106 146819744
CXorf51B 87 23 137 56 0 0 0.337 0.089 0.531 0.217 0.000 0.000 chrX 146804771 146815411
CXorf58 82 23 170 79 0 0 0.318 0.089 0.659 0.306 0.000 0.000 chrX 23903006 23944509
CXorf65 81 20 169 78 1 0 0.314 0.078 0.655 0.302 0.004 0.000 chrX 71098889 71111740
CXorf66 87 22 166 79 0 0 0.337 0.085 0.643 0.306 0.000 0.000 chrX 139950728 139970521
CYB561A3 130 30 122 71 0 0 0.504 0.116 0.473 0.275 0.000 0.000 chr11 61343805 61366882
CYB561D1 184 56 72 47 0 0 0.713 0.217 0.279 0.182 0.000 0.000 chr1 109489094 109505435
CYB561D2 173 59 82 44 0 0 0.671 0.229 0.318 0.171 0.000 0.000 chr3 50345862 50359069
CYB561 192 57 61 43 0 0 0.744 0.221 0.236 0.167 0.000 0.000 chr17 63427304 63451306
CYB5A 197 74 45 21 0 0 0.764 0.287 0.174 0.081 0.000 0.000 chr18 74245846 74296963
CYB5B 202 77 50 24 0 0 0.783 0.298 0.194 0.093 0.000 0.000 chr16 69419619 69471264
CYB5D1 219 76 38 28 0 0 0.849 0.295 0.147 0.109 0.000 0.000 chr17 7853003 7867282
CYB5D2 184 62 68 38 0 0 0.713 0.240 0.264 0.147 0.000 0.000 chr17 4138197 4162697
CYB5R1 224 88 32 15 0 0 0.868 0.341 0.124 0.058 0.000 0.000 chr1 202956873 202972257
CYB5R2 221 79 36 25 0 0 0.857 0.306 0.140 0.097 0.000 0.000 chr11 7660104 7678500
CYB5R3 179 50 65 44 0 0 0.694 0.194 0.252 0.171 0.000 0.000 chr22 42612840 42654392
CYB5R4 113 31 115 64 0 0 0.438 0.120 0.446 0.248 0.000 0.000 chr6 83854689 83972423
CYB5RL 205 67 38 25 0 0 0.795 0.260 0.147 0.097 0.000 0.000 chr1 54164651 54205030
CYBA 229 79 20 18 1 0 0.888 0.306 0.078 0.070 0.004 0.000 chr16 88638289 88656053
CYBB 58 9 191 89 0 0 0.225 0.035 0.740 0.345 0.000 0.000 chrX 37775059 37818461
CYBC1 207 66 49 37 0 0 0.802 0.256 0.190 0.143 0.000 0.000 chr17 82437586 82455752
CYBRD1 196 72 51 25 0 0 0.760 0.279 0.198 0.097 0.000 0.000 chr2 171517474 171563129
CYC1 175 47 73 50 0 0 0.678 0.182 0.283 0.194 0.000 0.000 chr8 144090076 144102525