Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CYCS 217 76 39 27 0 0 0.841 0.295 0.151 0.105 0.000 0.000 chr7 25113656 25130260
CYFIP1 170 50 50 31 0 0 0.659 0.194 0.194 0.120 0.000 0.000 chr15 22862052 22985368
CYFIP2 162 45 68 47 0 0 0.628 0.174 0.264 0.182 0.000 0.000 chr5 157261123 157400594
CYGB 197 57 51 38 0 0 0.764 0.221 0.198 0.147 0.000 0.000 chr17 76522356 76542709
CYLC1 58 15 134 59 0 0 0.225 0.058 0.519 0.229 0.000 0.000 chrX 83856146 83891698
CYLC2 223 85 32 20 0 0 0.864 0.329 0.124 0.078 0.000 0.000 chr9 102990333 103023488
CYLD 150 50 86 42 0 0 0.581 0.194 0.333 0.163 0.000 0.000 chr16 50737086 50806935
CYP11A1 189 69 60 29 0 0 0.733 0.267 0.233 0.112 0.000 0.000 chr15 74332762 74372646
CYP11B1 213 77 40 23 1 1 0.826 0.298 0.155 0.089 0.004 0.004 chr8 142867357 142884825
CYP11B2 222 83 32 20 2 1 0.860 0.322 0.124 0.078 0.008 0.004 chr8 142905559 142922843
CYP17A1 220 79 36 24 0 0 0.853 0.306 0.140 0.093 0.000 0.000 chr10 102825531 102842413
CYP19A1 152 42 66 43 0 0 0.589 0.163 0.256 0.167 0.000 0.000 chr15 51203057 51343596
CYP1A1 216 78 36 23 0 0 0.837 0.302 0.140 0.089 0.000 0.000 chr15 74714542 74730528
CYP1A2 207 73 48 29 0 0 0.802 0.283 0.186 0.112 0.000 0.000 chr15 74743845 74761607
CYP1B1 183 52 67 46 0 0 0.709 0.202 0.260 0.178 0.000 0.000 chr2 38062509 38081151
CYP20A1 166 48 84 51 0 0 0.643 0.186 0.326 0.198 0.000 0.000 chr2 203234018 203311026
CYP21A2 229 83 26 20 1 0 0.888 0.322 0.101 0.078 0.004 0.000 chr6 32033415 32046644
CYP24A1 227 85 28 17 0 0 0.880 0.329 0.109 0.066 0.000 0.000 chr20 54148446 54178986
CYP26A1 208 75 46 28 2 0 0.806 0.291 0.178 0.109 0.008 0.000 chr10 93068893 93082885
CYP26B1 155 36 91 63 0 0 0.601 0.140 0.353 0.244 0.000 0.000 chr2 72124238 72152862
CYP26C1 198 69 57 33 0 0 0.767 0.267 0.221 0.128 0.000 0.000 chr10 93055798 93074540
CYP27A1 148 36 91 58 0 0 0.574 0.140 0.353 0.225 0.000 0.000 chr2 218777147 218820293
CYP27B1 175 50 83 55 0 0 0.678 0.194 0.322 0.213 0.000 0.000 chr12 57757334 57772078
CYP27C1 175 46 64 43 0 0 0.678 0.178 0.248 0.167 0.000 0.000 chr2 127178832 127225299
CYP2A13 210 70 44 32 0 0 0.814 0.271 0.171 0.124 0.000 0.000 chr19 41083451 41101195
CYP2A6 191 56 61 44 0 0 0.740 0.217 0.236 0.171 0.000 0.000 chr19 40838541 40855447
CYP2A7 198 57 55 44 0 0 0.767 0.221 0.213 0.171 0.000 0.000 chr19 40870439 40887231
CYP2B6 219 81 32 22 0 0 0.849 0.314 0.124 0.085 0.000 0.000 chr19 40986282 41023398
CYP2C18 188 65 65 36 0 0 0.729 0.252 0.252 0.140 0.000 0.000 chr10 94678729 94741190
CYP2C19 181 61 59 33 0 0 0.702 0.236 0.229 0.128 0.000 0.000 chr10 94757681 94860547
CYP2C8 187 66 63 32 0 0 0.725 0.256 0.244 0.124 0.000 0.000 chr10 95031772 95074497
CYP2C9 186 62 60 35 0 0 0.721 0.240 0.233 0.136 0.000 0.000 chr10 94933658 94995091
CYP2D6 208 72 43 29 1 0 0.806 0.279 0.167 0.112 0.004 0.000 chr22 42121499 42135810
CYP2E1 206 77 45 25 3 1 0.798 0.298 0.174 0.097 0.012 0.004 chr10 133522363 133544123
CYP2F1 186 55 61 41 1 1 0.721 0.213 0.236 0.159 0.004 0.004 chr19 41109432 41133381
CYP2J2 181 67 55 26 0 0 0.702 0.260 0.213 0.101 0.000 0.000 chr1 59888308 59931773
CYP2R1 201 73 53 30 1 0 0.779 0.283 0.205 0.116 0.004 0.000 chr11 14872440 14897231
CYP2S1 210 76 40 24 0 0 0.814 0.295 0.155 0.093 0.000 0.000 chr19 41188219 41212539
CYP2U1 190 62 58 34 0 0 0.736 0.240 0.225 0.132 0.000 0.000 chr4 107926549 107958461
CYP2W1 203 66 49 33 0 0 0.787 0.256 0.190 0.128 0.000 0.000 chr7 978181 994640
CYP39A1 154 45 73 44 0 0 0.597 0.174 0.283 0.171 0.000 0.000 chr6 46544580 46657818
CYP3A43 162 41 83 55 0 0 0.628 0.159 0.322 0.213 0.000 0.000 chr7 99823013 99871093
CYP3A4 150 41 99 59 0 0 0.581 0.159 0.384 0.229 0.000 0.000 chr7 99751967 99789184
CYP3A5 145 47 95 48 0 0 0.562 0.182 0.368 0.186 0.000 0.000 chr7 99643194 99684996
CYP3A7 140 45 107 56 0 0 0.543 0.174 0.415 0.217 0.000 0.000 chr7 99700036 99740196
CYP46A1 186 57 60 42 0 0 0.721 0.221 0.233 0.163 0.000 0.000 chr14 99679298 99732301
CYP4A11 213 81 39 20 0 0 0.826 0.314 0.151 0.078 0.000 0.000 chr1 46924188 46946476
CYP4A22 219 83 37 20 0 0 0.849 0.322 0.143 0.078 0.000 0.000 chr1 47132441 47154727
CYP4B1 199 72 52 28 0 0 0.771 0.279 0.202 0.109 0.000 0.000 chr1 46794046 46824413
CYP4F11 192 61 51 31 0 0 0.744 0.236 0.198 0.120 0.000 0.000 chr19 15907377 15939529