Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CYP4F12 204 75 48 27 0 0 0.791 0.291 0.186 0.105 0.000 0.000 chr19 15668087 15702174
CYP4F22 191 51 43 32 0 0 0.740 0.198 0.167 0.124 0.000 0.000 chr19 15503525 15557317
CYP4F2 189 56 58 42 1 0 0.733 0.217 0.225 0.163 0.004 0.000 chr19 15873023 15903074
CYP4F3 211 73 40 29 1 0 0.818 0.283 0.155 0.112 0.004 0.000 chr19 15635897 15667825
CYP4F8 205 70 47 30 0 0 0.795 0.271 0.182 0.116 0.000 0.000 chr19 15610218 15635639
CYP4V2 225 85 30 18 0 0 0.872 0.329 0.116 0.070 0.000 0.000 chr4 186186567 186218463
CYP4X1 174 51 77 49 0 0 0.674 0.198 0.298 0.190 0.000 0.000 chr1 47018669 47055751
CYP4Z1 158 44 83 50 0 0 0.612 0.171 0.322 0.194 0.000 0.000 chr1 47062231 47123318
CYP51A1 195 71 55 28 0 0 0.756 0.275 0.213 0.109 0.000 0.000 chr7 92107153 92139477
CYP7A1 227 86 29 17 0 0 0.880 0.333 0.112 0.066 0.000 0.000 chr8 58485178 58505163
CYP7B1 128 33 76 39 0 0 0.496 0.128 0.295 0.151 0.000 0.000 chr8 64585851 64803737
CYP8B1 193 62 62 41 1 0 0.748 0.240 0.240 0.159 0.004 0.000 chr3 42867192 42880879
CYREN 202 71 53 31 0 0 0.783 0.275 0.205 0.120 0.000 0.000 chr7 135160785 135175707
CYRIA 144 34 76 50 0 0 0.558 0.132 0.295 0.194 0.000 0.000 chr2 16544459 16670834
CYRIB 143 36 71 47 0 0 0.554 0.140 0.275 0.182 0.000 0.000 chr8 129834593 130021560
CYS1 199 62 51 38 0 0 0.771 0.240 0.198 0.147 0.000 0.000 chr2 10051473 10085411
CYSLTR1 59 18 181 77 0 0 0.229 0.070 0.702 0.298 0.000 0.000 chrX 78266468 78332611
CYSLTR2 158 51 85 46 0 0 0.612 0.198 0.329 0.178 0.000 0.000 chr13 48648929 48716226
CYSRT1 196 55 59 47 0 0 0.760 0.213 0.229 0.182 0.000 0.000 chr9 137220174 137231315
CYSTM1 161 60 78 35 0 0 0.624 0.233 0.302 0.136 0.000 0.000 chr5 140170188 140248789
CYTH1 188 69 52 29 0 0 0.729 0.267 0.202 0.112 0.000 0.000 chr17 78669048 78787273
CYTH2 182 56 68 42 0 0 0.705 0.217 0.264 0.163 0.000 0.000 chr19 48464369 48487314
CYTH3 173 55 55 34 0 0 0.671 0.213 0.213 0.132 0.000 0.000 chr7 6156779 6277624
CYTH4 201 68 51 32 0 0 0.779 0.264 0.198 0.124 0.000 0.000 chr22 37277508 37320341
CYTIP 159 34 80 56 0 0 0.616 0.132 0.310 0.217 0.000 0.000 chr2 157409619 157449089
CYTL1 222 79 34 24 1 1 0.860 0.306 0.132 0.093 0.004 0.004 chr4 5009586 5024458
CYYR1 157 35 55 39 0 0 0.609 0.136 0.213 0.151 0.000 0.000 chr21 26461216 26578286
CZIB 217 81 40 23 0 0 0.841 0.314 0.155 0.089 0.000 0.000 chr1 53209099 53225634
D2HGDH 205 64 40 31 0 0 0.795 0.248 0.155 0.120 0.000 0.000 chr2 241729630 241773811
DAAM1 148 35 71 47 0 0 0.574 0.136 0.275 0.182 0.000 0.000 chr14 59183667 59376403
DAAM2 149 44 65 41 0 0 0.578 0.171 0.252 0.159 0.000 0.000 chr6 39787376 39909869
DAB1 68 6 99 60 0 0 0.264 0.023 0.384 0.233 0.000 0.000 chr1 56989778 57429060
DAB2IP 111 24 90 55 0 0 0.430 0.093 0.349 0.213 0.000 0.000 chr9 121646634 121790530
DAB2 206 72 41 27 0 0 0.798 0.279 0.159 0.105 0.000 0.000 chr5 39366677 39429980
DACH1 50 2 125 66 0 0 0.194 0.008 0.484 0.256 0.000 0.000 chr13 71432966 71872204
DACH2 25 3 180 72 0 0 0.097 0.012 0.698 0.279 0.000 0.000 chrX 86143451 86837602
DACT1 194 71 58 29 0 0 0.752 0.275 0.225 0.112 0.000 0.000 chr14 58632962 58653321
DACT2 237 87 19 16 1 1 0.919 0.337 0.074 0.062 0.004 0.004 chr6 168301904 168324777
DACT3 229 84 25 18 1 1 0.888 0.326 0.097 0.070 0.004 0.004 chr19 46642551 46666182
DAD1 192 58 55 39 0 0 0.744 0.225 0.213 0.151 0.000 0.000 chr14 22559907 22594224
DAG1 118 23 110 63 0 0 0.457 0.089 0.426 0.244 0.000 0.000 chr3 49465267 49540615
DAGLA 169 51 73 45 0 0 0.655 0.198 0.283 0.174 0.000 0.000 chr11 61675391 61752001
DAGLB 189 61 55 32 0 0 0.733 0.236 0.213 0.124 0.000 0.000 chr7 6404129 6452954
DALRD3 128 25 126 77 0 0 0.496 0.097 0.488 0.298 0.000 0.000 chr3 49010488 49023580
DAND5 198 62 54 37 0 0 0.767 0.240 0.209 0.143 0.000 0.000 chr19 12964576 12979760
DAOA 205 70 45 31 0 0 0.795 0.271 0.174 0.120 0.000 0.000 chr13 105461045 105496034
DAO 193 62 59 39 0 0 0.748 0.240 0.229 0.151 0.000 0.000 chr12 108875092 108906043
DAP3 143 39 102 59 0 0 0.554 0.151 0.395 0.229 0.000 0.000 chr1 155684091 155744010
DAPK1 117 30 59 33 0 0 0.453 0.116 0.229 0.128 0.000 0.000 chr9 87492867 87713634
DAPK2 106 8 106 74 0 0 0.411 0.031 0.411 0.287 0.000 0.000 chr15 63902036 64051485