JoGo: Joint Open Genome and Omics Platform

Genic Haplotype Summary

Genename

Examples: ALDH2, BRCA1.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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Genename	ALL BOTH # of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database	JPT BOTH # of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database	ALL SINGLE # of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	JPT SINGLE # of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	ALL MULTI # of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database	ALL BOTH # of samples with two haploids were completely assembled/# of total samples	JPT BOTH # of JPT samples with two haploids were completely assembled/# of total JPT samples	ALL SINGLE # of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	JPT SINGLE # of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	ALL MULTI # of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database	Chr	Start	End
DNAAF9	180	63	62	33	0	0.698	0.244	0.240	0.128	0.000	chr20	3244306	3412669
DNAH10	84	6	110	69	0	0.326	0.023	0.426	0.267	0.000	chr12	123757301	123940714
DNAH11	148	43	48	34	0	0.574	0.167	0.186	0.132	0.000	chr7	21538039	21906839
DNAH12	132	34	87	53	0	0.512	0.132	0.337	0.205	0.000	chr3	57288700	57549344
DNAH14	119	28	83	42	0	0.461	0.109	0.322	0.163	0.000	chr1	224924675	225404286
DNAH17	125	14	69	39	0	0.484	0.054	0.267	0.151	0.000	chr17	78418697	78582396
DNAH1	90	10	139	84	0	0.349	0.039	0.539	0.326	0.000	chr3	52311319	52405492
DNAH2	157	35	61	45	0	0.609	0.136	0.236	0.174	0.000	chr17	7712744	7838742
DNAH3	116	30	98	55	0	0.450	0.116	0.380	0.213	0.000	chr16	20928111	21155846
DNAH5	125	20	73	47	0	0.484	0.078	0.283	0.182	0.000	chr5	13685328	13949688
DNAH6	57	4	147	82	0	0.221	0.016	0.570	0.318	0.000	chr2	84511498	84824589
DNAH7	127	40	84	46	0	0.492	0.155	0.326	0.178	0.000	chr2	195732703	196073837
DNAH8	142	38	74	40	0	0.550	0.147	0.287	0.155	0.000	chr6	38710311	39035792
DNAH9	88	12	83	48	0	0.341	0.047	0.322	0.186	0.000	chr17	11593470	11974748
DNAI1	190	63	53	31	0	0.736	0.244	0.205	0.120	0.000	chr9	34453805	34525984
DNAI2	198	65	43	29	0	0.767	0.252	0.167	0.112	0.000	chr17	74269234	74319884
DNAI3	186	65	41	22	0	0.721	0.252	0.159	0.085	0.000	chr1	85057327	85138138
DNAI4	131	34	72	43	0	0.508	0.132	0.279	0.167	0.000	chr1	66807885	66929856
DNAI7	167	43	68	42	0	0.647	0.167	0.264	0.163	0.000	chr12	25103289	25200160
DNAJA1	221	82	36	22	0	0.857	0.318	0.140	0.085	0.000	chr9	33020273	33044907
DNAJA2	139	32	105	66	0	0.539	0.124	0.407	0.256	0.000	chr16	46950362	46978674
DNAJA3	172	42	69	49	0	0.667	0.163	0.267	0.190	0.000	chr16	4420868	4461775
DNAJA4	220	81	36	22	0	0.853	0.314	0.140	0.085	0.000	chr15	78259562	78287191
DNAJB11	184	56	66	42	0	0.713	0.217	0.256	0.163	0.000	chr3	186565720	186590793
DNAJB12	145	29	100	67	0	0.562	0.112	0.388	0.260	0.000	chr10	72327863	72359919
DNAJB13	217	71	36	29	0	0.841	0.275	0.140	0.112	0.000	chr11	73946026	73975281
DNAJB14	167	54	80	46	0	0.647	0.209	0.310	0.178	0.000	chr4	99891248	99951618
DNAJB1	175	50	80	52	0	0.678	0.194	0.310	0.202	0.000	chr19	14509769	14523397
DNAJB2	212	77	42	25	0	0.822	0.298	0.163	0.097	0.000	chr2	219274366	219291895
DNAJB4	211	77	45	26	0	0.818	0.298	0.174	0.101	0.000	chr1	77999939	78022964
DNAJB5	224	85	30	17	1	0.868	0.329	0.116	0.066	0.004	chr9	34984745	35003428
DNAJB6	185	54	45	33	0	0.717	0.209	0.174	0.128	0.000	chr7	157332004	157422439
DNAJB7	204	74	49	27	0	0.791	0.287	0.190	0.105	0.000	chr22	40854549	40867113
DNAJB8	228	84	26	18	0	0.884	0.326	0.101	0.070	0.000	chr3	128457437	128471890
DNAJB9	216	80	41	25	1	0.837	0.310	0.159	0.097	0.004	chr7	108564874	108579850
DNAJC10	154	60	93	43	0	0.597	0.233	0.360	0.167	0.000	chr2	182711257	182799464
DNAJC11	182	54	60	40	0	0.705	0.209	0.233	0.155	0.000	chr1	6629170	6706816
DNAJC12	191	71	61	29	0	0.740	0.275	0.236	0.112	0.000	chr10	67791669	67843188
DNAJC13	158	51	84	49	0	0.612	0.198	0.326	0.190	0.000	chr3	132412502	132544032
DNAJC14	212	73	45	31	0	0.822	0.283	0.174	0.120	0.000	chr12	55815985	55834587
DNAJC15	175	57	60	34	0	0.678	0.221	0.233	0.132	0.000	chr13	43018586	43119213
DNAJC16	177	59	72	40	0	0.686	0.229	0.279	0.155	0.000	chr1	15521848	15576733
DNAJC17	178	50	65	41	0	0.690	0.194	0.252	0.159	0.000	chr15	40760161	40812473
DNAJC18	156	53	94	47	0	0.605	0.205	0.364	0.182	0.000	chr5	139405203	139444525
DNAJC19	198	63	52	35	0	0.767	0.244	0.202	0.136	0.000	chr3	180978709	180994736
DNAJC1	81	2	140	87	0	0.314	0.008	0.543	0.337	0.000	chr10	21751548	22008730
DNAJC21	213	74	41	29	0	0.826	0.287	0.159	0.112	0.000	chr5	34924559	34963964
DNAJC22	180	58	73	43	0	0.698	0.225	0.283	0.167	0.000	chr12	49341888	49358690
DNAJC24	176	58	72	41	0	0.682	0.225	0.279	0.159	0.000	chr11	31364860	31437835
DNAJC25	205	66	47	35	0	0.795	0.256	0.182	0.136	0.000	chr9	111626334	111659345

Genic Haplotype Summary

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