JoGo: Joint Open Genome and Omics Platform

Haplotype Detail Info [IL3RA_chrX_1331785_1387689>a0012c0007]

geneid	3563
ensemblid	ENSG00000185291.12
hgncid	6012
symbol	IL3RA
name	interleukin 3 receptor subunit alpha
refseq_nuc	NM_002183.4
refseq_prot	NP_002174.1
ensembl_nuc	ENST00000331035.10
ensembl_prot	ENSP00000327890.4
mane_status	MANE Select
chr	chrX
start	1336785
end	1382689
strand	+
ver	v1.2
region	chrX:1336785-1382689
region5000	chrX:1331785-1387689
regionname0	IL3RA_chrX_1336785_1382689
regionname5000	IL3RA_chrX_1331785_1387689

chr:pos	ref	alt	af	annotation	impact	samples	AHAPIDS	ACHAPIDS	ACTHAPIDS	ACTGHAPIDS	ac	an	len	genename	geneid	featuretype	featureid	transcript_biotype	rank	hgvs_c	hgvs_p	cdna_pos_length	cds_pos_length	aa_pos_length	distance	status
chrX:1352428	TC TC	T T	0.0087	frameshift_variant frameshift_variant	HIGH	NA18961.hp1 NA18961.hp1	a0012 a0012	a0012c0007 a0012c0007	a0012c0007t0002 a0012c0007t0002	a0012c0007t0002g0045 a0012c0007t0002g0045	1	115	-1	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	6/12	c.541delC	p.His181fs	721/1541	541/1137	181/378		INFO_REALIGN_3_PRIME

chr:pos	ref	alt	af	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	len	genename	geneid	featuretype	featureid	transcript_biotype	rank	hgvs_c	hgvs_p	cdna_pos_length	cds_pos_length	aa_pos_length	distance	status

genename	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	chr	start	end
IL3RA	0/0	a0012	207	1	0	0	1	0	0	subcellular location copy fasta	chrX	1331785	1387689

genename	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	chr	start	end
IL3RA	0/0	c0007	1136	1	0	0	1	0	0	copy fasta	chrX	1331785	1387689

genename	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	achapid	total	AFR	AMR	EAS	EUR	SAS	clen	cseq	chr	start	end
IL3RA	0/0	a0012c0007	1	0	0	1	0	0	1136	copy fasta	chrX	1331785	1387689

pos	S. Strand	E# Exon Number	max	median	min	type	haplotypeid	max_hap_list	min_hap_list	symbol	chr	start	end
1336926	+	1	-0.7223	-0.7223	-0.7223	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1341728	+	2	0.9821	0.9821	0.9821	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1341829	+	2	-0.9963	-0.9963	-0.9963	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1345316	+	3	0.9951	0.9951	0.9951	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1345434	+	3	-0.9974	-0.9974	-0.9974	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1348431	+	4	0.6343	0.6342	0.6343	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1348545	+	4	-0.8445	-0.8445	-0.8445	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1352100	+	5	0.8403	0.8403	0.8403	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1352232	+	5	-0.7001	-0.7001	-0.7001	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1352322	+	6	0.5630	0.5630	0.5630	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1352506	+	6	-0.6171	-0.6170	-0.6171	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1356221	+	7	0.9630	0.9630	0.9630	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1356336	+	7	-0.9602	-0.9602	-0.9602	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1358861	+	8	0.9874	0.9874	0.9874	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1358887	+	8	-0.9556	-0.9556	-0.9556	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1365138	+	9	0.8342	0.8342	0.8342	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1365252	+	9	-0.8702	-0.8702	-0.8702	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1378659	+	10	0.9866	0.9866	0.9866	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1378764	+	10	-0.9942	-0.9942	-0.9942	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1381023	+	11	0.7952	0.7952	0.7952	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1381104	+	11	-0.9001	-0.9001	-0.9001	acceptor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689
1382391	+	12	0.6588	0.6588	0.6588	donor	a0012c0007	NA18961.hp1 NA18961.hp1	NA18961.hp1 NA18961.hp1	IL3RA	chrX	1331785	1387689

pos	annotation hgvs_c hgvs_p	clinvarid	clnsig	geneinfo	mc	clndisdb	strand strand	ahapid ahapid_count	chapid chapid count	thapid thapid_count	ghapid ghapid_count	AHAPIDS ahapids	ACHAPIDS achapids	ACTHAPIDS acthapids	ACTGHAPIDS actghapids	haplotypeids haplotypeids	impact	chr	ref	alt	external

CHR:POS	annotation hgvs_c hgvs_p	disease trait -log10p odds or beta	AHAPIDS ahapids	ACHAPIDS achapids	ACTHAPIDS acthapids	ACTGHAPIDS actghapids	haplotypeids haplotypeids	study	initial sample size/ replication sample size	report genes	mapped gene	strongest snp risk allele	strand strand	impact	chr	ref	alt

pos	genename hgvs_c hgvs_p annotation	tissue expression gene -log10(pval) slope Tissue name in GTEx database(the target eQTL tissue name of the GTEx database) The -log10(nominal pvalue) in GTEx database Slope in GTEx database (positive value:alt allele has higher gene expression)	ahapid chapid thapid ghapid ahapid_count chapid_count thapid_count ghapid_count	AHAPIDS ahapids	ACHAPIDS achapids	ACTHAPIDS acthapids	ACTGHAPIDS actghapids	haplotypeids haplotypeids	af allele frequency in GTEx database	ms The number of samples with minor allele in GTEx database	ma The number of minor allele count in GTEx database	ver GTEx version	vid Variant ID in GTEx database	strand strand	impact	chr	ref	alt	external
1354393:splice 1354393:variant goto	IL3RA intron_variant c.617-1828A>C IL3RA intron_variant c.617-1828A>C	SLC25A6 Brain_Nucleus_accumbens_basal_ganglia 5.559 0.176	10 14 26 68	a0001 a0002 a0005 a0006 a0007 others(5): Show a0001 a0002 a0005 a0006 a0007 a0009 a0012 a0014 a0015 a0016	a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 others(9): Show a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 a0002c0019 a0005c0012 a0006c0011 a0007c0010 a0009c0008 a0012c0007 a0014c0006 a0015c0017 a0016c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 others(21): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0003t0001 a0001c0003t0004 a0001c0020t0009 a0002c0002t0005 a0002c0015t0005 a0002c0019t0005 a0005c0012t0003 a0006c0011t0004 a0007c0010t0001 a0009c0008t0004 a0012c0007t0002 a0014c0006t0002 a0015c0017t0001 a0016c0004t0007	a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 others(63): Show a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0079 a0001c0001t0001g0084 a0001c0001t0001g0087 a0001c0001t0001g0104 a0001c0001t0001g0111 a0001c0001t0002g0038 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0077 a0001c0001t0003g0023 a0001c0001t0003g0036 a0001c0001t0003g0081 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0003g0094 a0001c0001t0003g0105 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0004g0052 a0001c0001t0004g0060 a0001c0001t0004g0065 a0001c0001t0004g0067 a0001c0001t0004g0076 a0001c0001t0006g0078 a0001c0001t0006g0080 a0001c0001t0006g0085 a0001c0001t0006g0086 a0001c0001t0006g0100 a0001c0001t0007g0097 a0001c0001t0008g0095 a0001c0001t0010g0039 a0001c0001t0011g0013 a0001c0001t0013g0091 a0001c0001t0014g0048 a0001c0001t0015g0096 a0001c0003t0001g0102 a0001c0003t0004g0066 a0001c0020t0009g0098 a0002c0002t0005g0005 a0002c0002t0005g0006 a0002c0002t0005g0025 a0002c0002t0005g0034 a0002c0002t0005g0099 a0002c0002t0005g0115 a0002c0015t0005g0019 a0002c0019t0005g0022 a0005c0012t0003g0020 a0006c0011t0004g0059 a0007c0010t0001g0007 a0009c0008t0004g0068 a0012c0007t0002g0045 a0014c0006t0002g0043 a0015c0017t0001g0004 a0016c0004t0007g0093	HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 others(63): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01123.hp1 HG01123.hp2 HG01192.hp2 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp2 HG01975.hp1 HG01975.hp2 HG02004.hp1 HG02040.hp2 HG02080.hp2 HG02145.hp2 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02738.hp2 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03471.hp2 HG03688.hp2 HG03927.hp2 HG03942.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18948.hp1 NA18961.hp1 NA18966.hp1 NA19056.hp2 NA19058.hp1 NA19063.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1	0.732	130	152	10	chrX_1354393_A_C_b38	+	MODIFIER	chrX	A A	C C	TogoVar
1354354:splice 1354354:variant goto	IL3RA intron_variant c.616+1848G>A IL3RA intron_variant c.616+1848G>A	IL3RA Brain_Nucleus_accumbens_basal_ganglia 5.595 -0.214	10 14 24 61	a0001 a0002 a0005 a0006 a0007 others(5): Show a0001 a0002 a0005 a0006 a0007 a0009 a0012 a0014 a0015 a0016	a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 others(9): Show a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 a0002c0019 a0005c0012 a0006c0011 a0007c0010 a0009c0008 a0012c0007 a0014c0006 a0015c0017 a0016c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 others(19): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0003t0001 a0001c0003t0004 a0001c0020t0009 a0002c0002t0005 a0002c0015t0005 a0002c0019t0005 a0005c0012t0003 a0006c0011t0004 a0007c0010t0001 a0009c0008t0004 a0012c0007t0002 a0014c0006t0002 a0015c0017t0001 a0016c0004t0007	a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 others(56): Show a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0079 a0001c0001t0001g0084 a0001c0001t0001g0087 a0001c0001t0001g0104 a0001c0001t0001g0111 a0001c0001t0002g0038 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0077 a0001c0001t0003g0023 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0003g0094 a0001c0001t0003g0105 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0004g0052 a0001c0001t0004g0060 a0001c0001t0004g0065 a0001c0001t0004g0067 a0001c0001t0004g0076 a0001c0001t0006g0078 a0001c0001t0006g0085 a0001c0001t0006g0086 a0001c0001t0008g0095 a0001c0001t0010g0039 a0001c0001t0011g0013 a0001c0001t0013g0091 a0001c0001t0015g0096 a0001c0003t0001g0102 a0001c0003t0004g0066 a0001c0020t0009g0098 a0002c0002t0005g0005 a0002c0002t0005g0006 a0002c0002t0005g0025 a0002c0002t0005g0034 a0002c0002t0005g0099 a0002c0002t0005g0115 a0002c0015t0005g0019 a0002c0019t0005g0022 a0005c0012t0003g0020 a0006c0011t0004g0059 a0007c0010t0001g0007 a0009c0008t0004g0068 a0012c0007t0002g0045 a0014c0006t0002g0043 a0015c0017t0001g0004 a0016c0004t0007g0093	HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 others(56): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01123.hp2 HG01192.hp2 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp2 HG01975.hp1 HG01975.hp2 HG02004.hp1 HG02040.hp2 HG02080.hp2 HG02145.hp2 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp2 HG02602.hp2 HG02622.hp2 HG02738.hp2 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03471.hp2 HG03688.hp2 HG03927.hp2 HG03942.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18948.hp1 NA18961.hp1 NA18966.hp1 NA19056.hp2 NA19058.hp1 NA19063.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1	0.722	135	158	10	chrX_1354354_G_A_b38	+	MODIFIER	chrX	G G	A A	TogoVar
1354354:splice 1354354:variant goto	IL3RA intron_variant c.616+1848G>A IL3RA intron_variant c.616+1848G>A	SLC25A6 Brain_Nucleus_accumbens_basal_ganglia 5.652 0.175	10 14 24 61	a0001 a0002 a0005 a0006 a0007 others(5): Show a0001 a0002 a0005 a0006 a0007 a0009 a0012 a0014 a0015 a0016	a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 others(9): Show a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 a0002c0019 a0005c0012 a0006c0011 a0007c0010 a0009c0008 a0012c0007 a0014c0006 a0015c0017 a0016c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 others(19): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0003t0001 a0001c0003t0004 a0001c0020t0009 a0002c0002t0005 a0002c0015t0005 a0002c0019t0005 a0005c0012t0003 a0006c0011t0004 a0007c0010t0001 a0009c0008t0004 a0012c0007t0002 a0014c0006t0002 a0015c0017t0001 a0016c0004t0007	a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 others(56): Show a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0079 a0001c0001t0001g0084 a0001c0001t0001g0087 a0001c0001t0001g0104 a0001c0001t0001g0111 a0001c0001t0002g0038 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0077 a0001c0001t0003g0023 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0003g0094 a0001c0001t0003g0105 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0004g0052 a0001c0001t0004g0060 a0001c0001t0004g0065 a0001c0001t0004g0067 a0001c0001t0004g0076 a0001c0001t0006g0078 a0001c0001t0006g0085 a0001c0001t0006g0086 a0001c0001t0008g0095 a0001c0001t0010g0039 a0001c0001t0011g0013 a0001c0001t0013g0091 a0001c0001t0015g0096 a0001c0003t0001g0102 a0001c0003t0004g0066 a0001c0020t0009g0098 a0002c0002t0005g0005 a0002c0002t0005g0006 a0002c0002t0005g0025 a0002c0002t0005g0034 a0002c0002t0005g0099 a0002c0002t0005g0115 a0002c0015t0005g0019 a0002c0019t0005g0022 a0005c0012t0003g0020 a0006c0011t0004g0059 a0007c0010t0001g0007 a0009c0008t0004g0068 a0012c0007t0002g0045 a0014c0006t0002g0043 a0015c0017t0001g0004 a0016c0004t0007g0093	HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 others(56): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01123.hp2 HG01192.hp2 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp2 HG01975.hp1 HG01975.hp2 HG02004.hp1 HG02040.hp2 HG02080.hp2 HG02145.hp2 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp2 HG02602.hp2 HG02622.hp2 HG02738.hp2 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03471.hp2 HG03688.hp2 HG03927.hp2 HG03942.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18948.hp1 NA18961.hp1 NA18966.hp1 NA19056.hp2 NA19058.hp1 NA19063.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1	0.722	135	158	10	chrX_1354354_G_A_b38	+	MODIFIER	chrX	G G	A A	TogoVar
1353326:splice 1353326:variant goto	IL3RA intron_variant c.616+827delC IL3RA intron_variant c.616+827delC	IL3RA Brain_Nucleus_accumbens_basal_ganglia 5.932 -0.231	11 15 25 60	a0001 a0002 a0004 a0005 a0006 others(6): Show a0001 a0002 a0004 a0005 a0006 a0007 a0009 a0012 a0014 a0015 a0016	a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 others(10): Show a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 a0002c0019 a0004c0018 a0005c0012 a0006c0011 a0007c0010 a0009c0008 a0012c0007 a0014c0006 a0015c0017 a0016c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 others(20): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0003t0001 a0001c0003t0004 a0001c0020t0009 a0002c0002t0005 a0002c0015t0005 a0002c0019t0005 a0004c0018t0003 a0005c0012t0003 a0006c0011t0004 a0007c0010t0001 a0009c0008t0004 a0012c0007t0002 a0014c0006t0002 a0015c0017t0001 a0016c0004t0007	a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 others(55): Show a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0079 a0001c0001t0001g0084 a0001c0001t0001g0087 a0001c0001t0001g0104 a0001c0001t0002g0038 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0077 a0001c0001t0003g0023 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0003g0094 a0001c0001t0003g0105 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0004g0052 a0001c0001t0004g0060 a0001c0001t0004g0065 a0001c0001t0004g0067 a0001c0001t0004g0076 a0001c0001t0006g0078 a0001c0001t0006g0085 a0001c0001t0006g0086 a0001c0001t0008g0095 a0001c0001t0010g0039 a0001c0001t0011g0013 a0001c0001t0013g0091 a0001c0001t0015g0096 a0001c0003t0001g0102 a0001c0003t0004g0066 a0001c0020t0009g0098 a0002c0002t0005g0005 a0002c0002t0005g0006 a0002c0002t0005g0025 a0002c0002t0005g0034 a0002c0002t0005g0099 a0002c0002t0005g0115 a0002c0015t0005g0019 a0002c0019t0005g0022 a0004c0018t0003g0112 a0005c0012t0003g0020 a0006c0011t0004g0059 a0007c0010t0001g0007 a0009c0008t0004g0068 a0012c0007t0002g0045 a0014c0006t0002g0043 a0015c0017t0001g0004 a0016c0004t0007g0093	HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 others(55): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01123.hp2 HG01192.hp2 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp2 HG01975.hp1 HG01975.hp2 HG02004.hp1 HG02040.hp2 HG02080.hp2 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp2 HG02602.hp2 HG02622.hp2 HG02738.hp2 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03471.hp2 HG03688.hp2 HG03927.hp2 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18948.hp1 NA18961.hp1 NA18966.hp1 NA19056.hp2 NA19058.hp1 NA19063.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1	0.737	136	150	10	chrX_1353326_AC_A_b38	+	MODIFIER	chrX	AC AC	A A	TogoVar
1353326:splice 1353326:variant goto	IL3RA intron_variant c.616+827delC IL3RA intron_variant c.616+827delC	SLC25A6 Brain_Nucleus_accumbens_basal_ganglia 5.476 0.181	11 15 25 60	a0001 a0002 a0004 a0005 a0006 others(6): Show a0001 a0002 a0004 a0005 a0006 a0007 a0009 a0012 a0014 a0015 a0016	a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 others(10): Show a0001c0001 a0001c0003 a0001c0020 a0002c0002 a0002c0015 a0002c0019 a0004c0018 a0005c0012 a0006c0011 a0007c0010 a0009c0008 a0012c0007 a0014c0006 a0015c0017 a0016c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 others(20): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0003t0001 a0001c0003t0004 a0001c0020t0009 a0002c0002t0005 a0002c0015t0005 a0002c0019t0005 a0004c0018t0003 a0005c0012t0003 a0006c0011t0004 a0007c0010t0001 a0009c0008t0004 a0012c0007t0002 a0014c0006t0002 a0015c0017t0001 a0016c0004t0007	a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 others(55): Show a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0079 a0001c0001t0001g0084 a0001c0001t0001g0087 a0001c0001t0001g0104 a0001c0001t0002g0038 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0077 a0001c0001t0003g0023 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0003g0094 a0001c0001t0003g0105 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0004g0052 a0001c0001t0004g0060 a0001c0001t0004g0065 a0001c0001t0004g0067 a0001c0001t0004g0076 a0001c0001t0006g0078 a0001c0001t0006g0085 a0001c0001t0006g0086 a0001c0001t0008g0095 a0001c0001t0010g0039 a0001c0001t0011g0013 a0001c0001t0013g0091 a0001c0001t0015g0096 a0001c0003t0001g0102 a0001c0003t0004g0066 a0001c0020t0009g0098 a0002c0002t0005g0005 a0002c0002t0005g0006 a0002c0002t0005g0025 a0002c0002t0005g0034 a0002c0002t0005g0099 a0002c0002t0005g0115 a0002c0015t0005g0019 a0002c0019t0005g0022 a0004c0018t0003g0112 a0005c0012t0003g0020 a0006c0011t0004g0059 a0007c0010t0001g0007 a0009c0008t0004g0068 a0012c0007t0002g0045 a0014c0006t0002g0043 a0015c0017t0001g0004 a0016c0004t0007g0093	HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 others(55): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01123.hp2 HG01192.hp2 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp2 HG01975.hp1 HG01975.hp2 HG02004.hp1 HG02040.hp2 HG02080.hp2 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp2 HG02602.hp2 HG02622.hp2 HG02738.hp2 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03471.hp2 HG03688.hp2 HG03927.hp2 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18948.hp1 NA18961.hp1 NA18966.hp1 NA19056.hp2 NA19058.hp1 NA19063.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1	0.737	136	150	10	chrX_1353326_AC_A_b38	+	MODIFIER	chrX	AC AC	A A	TogoVar

Haplotype Detail Info [IL3RA_chrX_1331785_1387689>a0012c0007]

🧬 Gene Summary

🧬 JoGo Online Haplotype Explorer IL3RA_chrX_1331785_1387689

AVariants in Amino-acids (protein) level Haplotype (Total: 1)

CVariants in Coding level Haplotype (Total: 0)

AAmino-acid (protein) Level Haplotype Info (Total: 1)

CCoding Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 1)

📊 HaplotypeQTL Info

⚡ Splicing Related Variants (Total: 22)

🩺 Clinvar Related Variants (Total: 0)

GWASCatalog Related Variants (Total: 0)

GTEx Related Variants (Page 1 of 1 - Total: 5)