Summary of Gene Haplotype Catalog by Sample

view srwgs view lrwgs sampleid popname gpopname BOTH SINGLE MULTI NONE BOTH
ratio of gene both haplotypes are cataloged.
 SINGLE
ratio of gene only one haplotype was decided. For chrX and the sample is male then cataloged to JoGo haplotype database. In other case, not cataloged in JoGo database (since incomplete)
 MULTI
ratio of gene more than two haplotypes were estimated. Not cataloged in JoGo database (since complex structure)
 NONE
ratio of gene no haplotype was completed (since complex structure)
srWGS lrWGS HG02895 GWD AFR 15316 3158 65 700 0.80 0.16 0.00 0.04
srWGS lrWGS HG02896 GWD AFR 15623 2801 59 756 0.81 0.15 0.00 0.04
srWGS lrWGS HG02897 GWD AFR 15333 3099 50 757 0.80 0.16 0.00 0.04
srWGS lrWGS HG02922 ESN AFR 17392 1262 132 453 0.90 0.07 0.01 0.02
srWGS lrWGS HG02965 ESN AFR 16112 2540 94 493 0.84 0.13 0.00 0.03
srWGS lrWGS HG02970 ESN AFR 16141 2125 71 902 0.84 0.11 0.00 0.05
srWGS lrWGS HG02976 ESN AFR 16976 1442 91 730 0.88 0.07 0.00 0.04
srWGS lrWGS HG03017 PJL SAS 14257 4017 51 914 0.74 0.21 0.00 0.05
srWGS lrWGS HG03041 GWD AFR 16961 1609 56 613 0.88 0.08 0.00 0.03
srWGS lrWGS HG03098 MSL AFR 16411 2192 70 566 0.85 0.11 0.00 0.03
srWGS lrWGS HG03130 ESN AFR 16078 2531 113 517 0.84 0.13 0.01 0.03
srWGS lrWGS HG03139 ESN AFR 16567 2143 63 466 0.86 0.11 0.00 0.02
srWGS lrWGS HG03195 ESN AFR 16602 1987 91 559 0.86 0.10 0.00 0.03
srWGS lrWGS HG03209 MSL AFR 16382 2225 95 537 0.85 0.12 0.00 0.03
srWGS lrWGS HG03225 MSL AFR 16516 2152 87 484 0.86 0.11 0.00 0.03
srWGS lrWGS HG03239 PJL SAS 15063 3177 58 941 0.78 0.17 0.00 0.05
srWGS lrWGS HG03453 MSL AFR 17233 1309 99 598 0.90 0.07 0.01 0.03
srWGS lrWGS HG03471 MSL AFR 16545 2030 116 548 0.86 0.11 0.01 0.03
srWGS lrWGS HG03486 MSL AFR 16983 1539 112 605 0.88 0.08 0.01 0.03
srWGS lrWGS HG03490 PJL SAS 12501 5646 52 1040 0.65 0.29 0.00 0.05
srWGS lrWGS HG03491 PJL SAS 13816 4236 51 1136 0.72 0.22 0.00 0.06
srWGS lrWGS HG03492 PJL SAS 14792 3374 94 979 0.77 0.18 0.00 0.05
srWGS lrWGS HG03516 ESN AFR 16804 1657 100 678 0.87 0.09 0.01 0.04
srWGS lrWGS HG03540 GWD AFR 17303 1271 88 577 0.90 0.07 0.00 0.03
srWGS lrWGS HG03579 MSL AFR 16531 2082 83 543 0.86 0.11 0.00 0.03
srWGS lrWGS HG03654 PJL SAS 14010 4035 81 1113 0.73 0.21 0.00 0.06
srWGS lrWGS HG03669 PJL SAS 14474 3458 78 1229 0.75 0.18 0.00 0.06
srWGS lrWGS HG03688 STU SAS 13736 4259 68 1176 0.71 0.22 0.00 0.06
srWGS lrWGS HG03704 PJL SAS 14907 3311 43 978 0.77 0.17 0.00 0.05
srWGS lrWGS HG03710 PJL SAS 14147 4080 55 957 0.74 0.21 0.00 0.05
srWGS lrWGS HG03831 BEB SAS 14800 3295 81 1063 0.77 0.17 0.00 0.06
srWGS lrWGS HG03834 BEB SAS 15141 2909 80 1109 0.79 0.15 0.00 0.06
srWGS lrWGS HG03927 BEB SAS 13971 4033 46 1189 0.73 0.21 0.00 0.06
srWGS lrWGS HG03942 BEB SAS 13846 4190 66 1137 0.72 0.22 0.00 0.06
srWGS lrWGS HG04115 STU SAS 14222 4050 84 883 0.74 0.21 0.00 0.05
srWGS lrWGS HG04184 BEB SAS 14565 3442 95 1137 0.76 0.18 0.00 0.06
srWGS lrWGS HG04199 STU SAS 14360 3865 58 956 0.75 0.20 0.00 0.05
srWGS lrWGS HG04204 STU SAS 14396 3776 68 999 0.75 0.20 0.00 0.05
srWGS lrWGS HG04228 STU SAS 14423 3745 75 996 0.75 0.19 0.00 0.05
srWGS lrWGS HG06807 USA AFR 17165 1324 107 643 0.89 0.07 0.01 0.03
srWGS lrWGS NA18522 YRI AFR 16537 2082 116 504 0.86 0.11 0.01 0.03
srWGS lrWGS NA18612 CHB EAS 13035 5034 52 1118 0.68 0.26 0.00 0.06
srWGS lrWGS NA18747 CHB EAS 13809 4283 52 1095 0.72 0.22 0.00 0.06
srWGS lrWGS NA18906 YRI AFR 16990 1620 158 471 0.88 0.08 0.01 0.02
srWGS lrWGS NA18939 JPT EAS 11173 6568 38 1460 0.58 0.34 0.00 0.08
srWGS lrWGS NA18940 JPT EAS 9154 8239 17 1829 0.48 0.43 0.00 0.10
srWGS lrWGS NA18941 JPT EAS 11195 6459 32 1553 0.58 0.34 0.00 0.08
srWGS lrWGS NA18942 JPT EAS 12375 5420 42 1402 0.64 0.28 0.00 0.07
srWGS lrWGS NA18943 JPT EAS 10917 6771 29 1522 0.57 0.35 0.00 0.08
srWGS lrWGS NA18944 JPT EAS 12116 5810 54 1259 0.63 0.30 0.00 0.07