| view srwgs | view lrwgs | sampleid | popname | gpopname | BOTH | SINGLE | MULTI | NONE | BOTH ratio of gene both haplotypes are cataloged.
|
SINGLE ratio of gene only one haplotype was decided. For
chrX and the sample is male then cataloged to JoGo haplotype database. In other case, not
cataloged in JoGo database (since incomplete)
|
MULTI ratio of gene more than two haplotypes were
estimated. Not cataloged in JoGo database (since complex structure)
|
NONE ratio of gene no haplotype was completed (since
complex structure)
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| srWGS | lrWGS | HG00099 | GBR | EUR | 14895 | 3184 | 76 | 1084 | 0.77 | 0.17 | 0.00 | 0.06 |
| srWGS | lrWGS | HG00140 | GBR | EUR | 14297 | 3992 | 61 | 889 | 0.74 | 0.21 | 0.00 | 0.05 |
| srWGS | lrWGS | HG00280 | FIN | EUR | 14171 | 4031 | 50 | 987 | 0.74 | 0.21 | 0.00 | 0.05 |
| srWGS | lrWGS | HG00323 | FIN | EUR | 13764 | 4329 | 69 | 1077 | 0.72 | 0.23 | 0.00 | 0.06 |
| srWGS | lrWGS | HG00408 | CHS | EAS | 13798 | 4245 | 66 | 1130 | 0.72 | 0.22 | 0.00 | 0.06 |
| srWGS | lrWGS | HG00423 | CHS | EAS | 13324 | 4499 | 80 | 1336 | 0.69 | 0.23 | 0.00 | 0.07 |
| srWGS | lrWGS | HG00438 | CHS | EAS | 14630 | 3544 | 61 | 1004 | 0.76 | 0.18 | 0.00 | 0.05 |
| srWGS | lrWGS | HG00544 | CHS | EAS | 13562 | 4380 | 67 | 1230 | 0.70 | 0.23 | 0.00 | 0.06 |
| srWGS | lrWGS | HG00558 | CHS | EAS | 14240 | 3884 | 53 | 1062 | 0.74 | 0.20 | 0.00 | 0.06 |
| srWGS | lrWGS | HG00597 | CHS | EAS | 13680 | 4266 | 62 | 1231 | 0.71 | 0.22 | 0.00 | 0.06 |
| srWGS | lrWGS | HG00609 | CHS | EAS | 13580 | 4591 | 51 | 1017 | 0.71 | 0.24 | 0.00 | 0.05 |
| srWGS | lrWGS | HG00621 | CHS | EAS | 14026 | 4187 | 48 | 978 | 0.73 | 0.22 | 0.00 | 0.05 |
| srWGS | lrWGS | HG00639 | PUR | AMR | 15627 | 2739 | 50 | 823 | 0.81 | 0.14 | 0.00 | 0.04 |
| srWGS | lrWGS | HG00642 | PUR | AMR | 14731 | 3561 | 62 | 885 | 0.77 | 0.19 | 0.00 | 0.05 |
| srWGS | lrWGS | HG00673 | CHS | EAS | 13566 | 4457 | 82 | 1134 | 0.71 | 0.23 | 0.00 | 0.06 |
| srWGS | lrWGS | HG00733 | PUR | AMR | 12371 | 5304 | 42 | 1522 | 0.64 | 0.28 | 0.00 | 0.08 |
| srWGS | lrWGS | HG00735 | PUR | AMR | 15733 | 2489 | 95 | 922 | 0.82 | 0.13 | 0.00 | 0.05 |
| srWGS | lrWGS | HG00738 | PUR | AMR | 14859 | 3450 | 70 | 860 | 0.77 | 0.18 | 0.00 | 0.04 |
| srWGS | lrWGS | HG00741 | PUR | AMR | 15858 | 2427 | 99 | 855 | 0.82 | 0.13 | 0.01 | 0.04 |
| srWGS | lrWGS | HG01069 | PUR | AMR | 13302 | 4790 | 29 | 1118 | 0.69 | 0.25 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01070 | PUR | AMR | 14052 | 3948 | 42 | 1197 | 0.73 | 0.21 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01071 | PUR | AMR | 15736 | 2686 | 75 | 742 | 0.82 | 0.14 | 0.00 | 0.04 |
| srWGS | lrWGS | HG01074 | PUR | AMR | 14444 | 3892 | 45 | 858 | 0.75 | 0.20 | 0.00 | 0.04 |
| srWGS | lrWGS | HG01081 | PUR | AMR | 15457 | 2838 | 71 | 873 | 0.80 | 0.15 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01099 | PUR | AMR | 14299 | 3883 | 43 | 1014 | 0.74 | 0.20 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01106 | PUR | AMR | 14687 | 3512 | 71 | 969 | 0.76 | 0.18 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01109 | PUR | AMR | 16174 | 2297 | 52 | 716 | 0.84 | 0.12 | 0.00 | 0.04 |
| srWGS | lrWGS | HG01123 | CLM | AMR | 13909 | 3888 | 77 | 1365 | 0.72 | 0.20 | 0.00 | 0.07 |
| srWGS | lrWGS | HG01167 | PUR | AMR | 13927 | 4193 | 56 | 1063 | 0.72 | 0.22 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01168 | PUR | AMR | 13485 | 4486 | 37 | 1231 | 0.70 | 0.23 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01169 | PUR | AMR | 14224 | 3888 | 52 | 1075 | 0.74 | 0.20 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01175 | PUR | AMR | 15466 | 2749 | 69 | 955 | 0.80 | 0.14 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01192 | PUR | AMR | 14595 | 3653 | 61 | 930 | 0.76 | 0.19 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01243 | PUR | AMR | 16053 | 2466 | 72 | 648 | 0.83 | 0.13 | 0.00 | 0.03 |
| srWGS | lrWGS | HG01255 | CLM | AMR | 14573 | 3745 | 52 | 869 | 0.76 | 0.19 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01256 | CLM | AMR | 12967 | 5066 | 34 | 1172 | 0.67 | 0.26 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01257 | CLM | AMR | 13452 | 4580 | 29 | 1178 | 0.70 | 0.24 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01258 | CLM | AMR | 14191 | 3957 | 64 | 1027 | 0.74 | 0.21 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01261 | CLM | AMR | 14633 | 3725 | 35 | 846 | 0.76 | 0.19 | 0.00 | 0.04 |
| srWGS | lrWGS | HG01346 | CLM | AMR | 14832 | 3262 | 84 | 1061 | 0.77 | 0.17 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01358 | CLM | AMR | 13324 | 4666 | 56 | 1193 | 0.69 | 0.24 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01361 | CLM | AMR | 14548 | 3423 | 116 | 1152 | 0.76 | 0.18 | 0.01 | 0.06 |
| srWGS | lrWGS | HG01433 | CLM | AMR | 14852 | 3448 | 54 | 885 | 0.77 | 0.18 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01496 | CLM | AMR | 15459 | 2893 | 69 | 818 | 0.80 | 0.15 | 0.00 | 0.04 |
| srWGS | lrWGS | HG01515 | IBS | EUR | 13060 | 5048 | 43 | 1088 | 0.68 | 0.26 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01516 | IBS | EUR | 13120 | 4827 | 42 | 1250 | 0.68 | 0.25 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01517 | IBS | EUR | 13516 | 4500 | 49 | 1174 | 0.70 | 0.23 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01884 | ACB | AFR | 16984 | 1528 | 61 | 666 | 0.88 | 0.08 | 0.00 | 0.03 |
| srWGS | lrWGS | HG01891 | ACB | AFR | 16396 | 1672 | 93 | 1078 | 0.85 | 0.09 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01928 | PEL | AMR | 12222 | 5982 | 47 | 988 | 0.64 | 0.31 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01934 | PEL | AMR | 12945 | 5164 | 59 | 1071 | 0.67 | 0.27 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01943 | PEL | AMR | 11828 | 6066 | 60 | 1285 | 0.61 | 0.32 | 0.00 | 0.07 |
| srWGS | lrWGS | HG01952 | PEL | AMR | 12843 | 5374 | 79 | 943 | 0.67 | 0.28 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01975 | PEL | AMR | 12689 | 5378 | 55 | 1117 | 0.66 | 0.28 | 0.00 | 0.06 |
| srWGS | lrWGS | HG01978 | PEL | AMR | 14251 | 4040 | 92 | 856 | 0.74 | 0.21 | 0.00 | 0.04 |
| srWGS | lrWGS | HG01981 | PEL | AMR | 13948 | 4208 | 44 | 1039 | 0.72 | 0.22 | 0.00 | 0.05 |
| srWGS | lrWGS | HG01993 | PEL | AMR | 12944 | 5087 | 73 | 1135 | 0.67 | 0.26 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02004 | PEL | AMR | 12881 | 5166 | 57 | 1135 | 0.67 | 0.27 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02015 | KHV | EAS | 12604 | 5318 | 41 | 1276 | 0.66 | 0.28 | 0.00 | 0.07 |
| srWGS | lrWGS | HG02027 | KHV | EAS | 13191 | 4806 | 58 | 1184 | 0.69 | 0.25 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02040 | KHV | EAS | 14044 | 4132 | 47 | 1016 | 0.73 | 0.21 | 0.00 | 0.05 |
| srWGS | lrWGS | HG02055 | ACB | AFR | 16408 | 2172 | 87 | 572 | 0.85 | 0.11 | 0.00 | 0.03 |
| srWGS | lrWGS | HG02056 | KHV | EAS | 13441 | 4654 | 63 | 1081 | 0.70 | 0.24 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02071 | KHV | EAS | 13158 | 4834 | 51 | 1196 | 0.68 | 0.25 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02074 | KHV | EAS | 12962 | 5050 | 56 | 1171 | 0.67 | 0.26 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02080 | KHV | EAS | 13836 | 4114 | 70 | 1219 | 0.72 | 0.21 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02083 | KHV | EAS | 13596 | 4481 | 53 | 1109 | 0.71 | 0.23 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02109 | ACB | AFR | 17122 | 1430 | 73 | 614 | 0.89 | 0.07 | 0.00 | 0.03 |
| srWGS | lrWGS | HG02129 | KHV | EAS | 13333 | 4685 | 60 | 1161 | 0.69 | 0.24 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02132 | KHV | EAS | 13612 | 4516 | 61 | 1050 | 0.71 | 0.23 | 0.00 | 0.05 |
| srWGS | lrWGS | HG02135 | KHV | EAS | 12974 | 5047 | 39 | 1179 | 0.67 | 0.26 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02145 | ACB | AFR | 16350 | 2106 | 97 | 686 | 0.85 | 0.11 | 0.01 | 0.04 |
| srWGS | lrWGS | HG02148 | PEL | AMR | 11986 | 6081 | 55 | 1117 | 0.62 | 0.32 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02155 | CDX | EAS | 13421 | 4580 | 59 | 1179 | 0.70 | 0.24 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02165 | CDX | EAS | 14074 | 3961 | 78 | 1126 | 0.73 | 0.21 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02257 | ACB | AFR | 16988 | 1433 | 66 | 752 | 0.88 | 0.07 | 0.00 | 0.04 |
| srWGS | lrWGS | HG02258 | ACB | AFR | 16553 | 2046 | 78 | 562 | 0.86 | 0.11 | 0.00 | 0.03 |
| srWGS | lrWGS | HG02273 | PEL | AMR | 11855 | 6212 | 70 | 1102 | 0.62 | 0.32 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02280 | ACB | AFR | 16902 | 1589 | 100 | 648 | 0.88 | 0.08 | 0.01 | 0.03 |
| srWGS | lrWGS | HG02293 | PEL | AMR | 12001 | 6051 | 34 | 1153 | 0.62 | 0.31 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02300 | PEL | AMR | 13113 | 4982 | 46 | 1098 | 0.68 | 0.26 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02451 | ACB | AFR | 16851 | 1671 | 76 | 641 | 0.88 | 0.09 | 0.00 | 0.03 |
| srWGS | lrWGS | HG02486 | ACB | AFR | 16255 | 2191 | 83 | 710 | 0.84 | 0.11 | 0.00 | 0.04 |
| srWGS | lrWGS | HG02523 | KHV | EAS | 13618 | 4406 | 46 | 1169 | 0.71 | 0.23 | 0.00 | 0.06 |
| srWGS | lrWGS | HG02559 | ACB | AFR | 17224 | 1215 | 85 | 715 | 0.90 | 0.06 | 0.00 | 0.04 |
| srWGS | lrWGS | HG02572 | GWD | AFR | 16129 | 2393 | 93 | 624 | 0.84 | 0.12 | 0.00 | 0.03 |
| srWGS | lrWGS | HG02602 | PJL | SAS | 14272 | 3964 | 95 | 908 | 0.74 | 0.21 | 0.00 | 0.05 |
| srWGS | lrWGS | HG02615 | GWD | AFR | 16586 | 1883 | 61 | 709 | 0.86 | 0.10 | 0.00 | 0.04 |
| srWGS | lrWGS | HG02622 | GWD | AFR | 17359 | 1228 | 148 | 504 | 0.90 | 0.06 | 0.01 | 0.03 |
| srWGS | lrWGS | HG02630 | GWD | AFR | 16957 | 1485 | 93 | 704 | 0.88 | 0.08 | 0.00 | 0.04 |
| srWGS | lrWGS | HG02647 | GWD | AFR | 15879 | 2577 | 122 | 661 | 0.83 | 0.13 | 0.01 | 0.03 |
| srWGS | lrWGS | HG02683 | PJL | SAS | 13561 | 4574 | 71 | 1033 | 0.70 | 0.24 | 0.00 | 0.05 |
| srWGS | lrWGS | HG02698 | PJL | SAS | 14090 | 4054 | 77 | 1018 | 0.73 | 0.21 | 0.00 | 0.05 |
| srWGS | lrWGS | HG02717 | GWD | AFR | 16032 | 2428 | 77 | 702 | 0.83 | 0.13 | 0.00 | 0.04 |
| srWGS | lrWGS | HG02723 | GWD | AFR | 16502 | 1838 | 79 | 820 | 0.86 | 0.10 | 0.00 | 0.04 |
| srWGS | lrWGS | HG02735 | PJL | SAS | 14542 | 3685 | 56 | 956 | 0.76 | 0.19 | 0.00 | 0.05 |
| srWGS | lrWGS | HG02738 | PJL | SAS | 13649 | 4513 | 49 | 1028 | 0.71 | 0.23 | 0.00 | 0.05 |
| srWGS | lrWGS | HG02809 | GWD | AFR | 16834 | 1770 | 81 | 554 | 0.87 | 0.09 | 0.00 | 0.03 |
| srWGS | lrWGS | HG02818 | GWD | AFR | 16199 | 2010 | 79 | 951 | 0.84 | 0.10 | 0.00 | 0.05 |
| srWGS | lrWGS | HG02886 | GWD | AFR | 16771 | 1684 | 117 | 667 | 0.87 | 0.09 | 0.01 | 0.03 |