Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
A1BG_chr19_58340183_58358492	0/1	a0001	495	305	59	58	135	13	39	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	1/0	a0002	495	64	26	12	19	3	3	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	a0003	495	8	5	2	1	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	a0004	495	2	0	2	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	a0005	495	2	0	2	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	a0006	495	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	a0007	495	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	a0008	495	1	0	0	1	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	a0009	495	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	a0010	495	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1CF_chr10_50794409_50890627	1/1	a0001	586	325	77	49	145	12	40	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	a0002	586	12	11	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	a0003	586	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A2ML1_chr12_8817621_8881787	0/0	a0001	1454	160	9	26	106	6	13	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/1	a0002	1454	77	18	9	36	2	11	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0003	1454	26	1	15	0	2	8	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0004	1454	12	7	5	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0005	1258	11	0	2	1	2	6	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	1/0	a0006	1454	8	6	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0007	1454	7	0	0	6	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0008	482	7	7	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0009	1454	4	3	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0010	1454	4	2	2	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0011	1454	4	0	3	0	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0012	1454	3	3	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0013	482	3	3	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0014	1454	3	3	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0015	1454	3	3	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0016	1454	3	3	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0017	1454	3	2	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0018	1454	2	0	0	2	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0019	1454	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0020	1454	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0021	1454	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0022	1454	2	0	2	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0023	1454	2	0	2	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0024	1454	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0025	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0026	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0027	1420	1	0	0	1	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0028	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0029	1454	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0030	1295	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0031	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0032	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0033	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0034	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0035	1454	1	0	0	1	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0036	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0037	1454	1	0	0	1	0	0	copy fasta	A2ML1	chr12	8817621	8881787