JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXL12_chr19_9805270_9824079	1/1	a0001	326	325	95	76	100	16	36	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	a0002	326	12	0	0	12	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	a0003	326	1	1	0	0	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL13_chr7_102806189_103079796	0/1	a0001	825	198	53	43	68	10	23	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0002	825	42	9	1	26	0	6	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0003	825	30	0	2	20	2	6	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0004	825	22	0	1	21	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	1/0	a0005	825	10	9	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0006	825	9	0	7	1	0	1	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0007	825	6	5	1	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0008	825	2	1	1	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0009	190	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0010	825	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0011	825	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0012	825	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0013	825	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0014	825	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0015	825	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0016	825	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	a0017	825	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL14_chr12_1560993_1599581	1/1	a0001	418	417	100	74	179	16	46	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	a0002	426	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL15_chr10_102415836_102428136	1/1	a0001	300	366	83	72	158	11	40	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	a0002	300	1	0	0	0	1	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	a0003	300	1	1	0	0	0	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL16_chr16_687500_710801	1/1	a0001	479	371	96	76	137	10	50	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	a0002	479	1	0	0	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL17_chr5_107854035_108387098	1/1	a0001	701	217	53	48	78	14	22	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	a0002	701	10	10	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	a0003	701	6	5	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	a0004	701	5	4	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	a0005	702	3	2	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	a0006	701	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	a0007	701	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	a0008	701	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL18_chr7_5470797_5518809	1/1	a0001	718	291	78	65	100	13	33	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0002	700	35	5	9	16	1	4	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0003	718	4	4	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0004	700	2	1	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0005	700	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0006	718	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0007	718	1	0	0	0	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0008	718	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0009	718	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	a0010	700	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL19_chr16_30918572_30953783	1/1	a0001	674	236	82	62	54	12	24	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	a0002	674	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	a0003	674	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL20_chr17_39247663_39406626	1/1	a0001	436	228	79	42	83	12	10	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	a0002	436	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626