JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GAGE12J_chrX_49317037_49334384	0/0	a0008	117	2	2	0	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0009	117	1	0	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0010	117	1	0	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0011	86	1	0	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0012	117	1	0	0	1	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0013	116	1	1	0	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0014	117	1	0	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE13_chrX_49326582_49343949	0/0	a0001	116	29	5	9	9	1	5	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	a0002	116	23	5	4	8	0	6	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	a0003	117	22	0	1	10	1	10	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	a0004	116	11	9	0	2	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	a0005	117	3	0	2	1	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	a0006	117	2	0	2	0	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	a0007	116	1	0	0	1	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	1/0	a0008	117	1	0	0	0	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	a0009	107	1	0	0	1	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE1_chrX_49594020_49613538	1/0	a0001	117	193	67	32	75	4	14	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/1	a0002	116	98	4	22	51	6	14	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0003	116	7	1	1	2	0	3	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0004	117	4	2	0	2	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0005	117	2	1	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0006	116	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0007	34	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0008	57	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0009	117	1	0	0	0	0	1	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0010	107	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0011	117	1	0	1	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	a0012	117	1	0	0	0	1	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE2A_chrX_49584496_49601824	0/0	a0001	116	53	2	13	25	3	10	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	a0002	117	32	10	8	8	1	5	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	1/0	a0003	116	20	8	2	9	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	a0004	117	10	9	1	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	a0005	117	9	4	1	4	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	a0006	117	2	1	1	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	a0007	116	1	0	0	0	1	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	a0008	41	1	0	0	1	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	a0009	104	1	0	1	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	a0010	117	1	1	0	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAK_chr4_844277_937316	1/0	a0001	1311	290	69	64	107	11	38	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0002	1311	38	0	9	25	2	2	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/1	a0003	1311	23	0	3	19	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0004	1311	10	10	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0005	1311	4	3	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0006	1311	4	4	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0007	1311	3	3	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0008	1311	2	0	0	2	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0009	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0010	1311	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0011	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0012	1311	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316