JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSFX3_chrX_149543210_149554924	0/0	a0005	333	3	3	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	a0006	333	1	1	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	a0007	252	1	1	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	a0008	11	1	0	0	1	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX4_chrX_149924573_149936287	1/1	a0001	333	276	55	55	123	11	30	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	a0002	333	21	19	2	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	a0003	253	1	0	0	1	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	a0004	333	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	a0005	282	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	a0006	333	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFY1_chrY_18541720_18553592	0/0	a0001	401	46	8	7	20	2	9	copy fasta	HSFY1	chrY	18541720	18553592
HSFY1_chrY_18541720_18553592	0/0	a0002	16	1	0	0	1	0	0	copy fasta	HSFY1	chrY	18541720	18553592
HSFY1_chrY_18541720_18553592	0/0	a0003	187	1	0	0	0	0	1	copy fasta	HSFY1	chrY	18541720	18553592
HSFY1_chrY_18541720_18553592	0/0	a0004	187	1	0	1	0	0	0	copy fasta	HSFY1	chrY	18541720	18553592
HSFY1_chrY_18541720_18553592	0/0	a0005	104	1	0	0	1	0	0	copy fasta	HSFY1	chrY	18541720	18553592
HSFY2_chrY_18766814_18778735	0/0	a0000	0	1	1	0	0	0	0	copy fasta	HSFY2	chrY	18766814	18778735
HSFY2_chrY_18766814_18778735	0/0	a0001	401	66	9	5	41	2	9	copy fasta	HSFY2	chrY	18766814	18778735
HSH2D_chr19_16138685_16163575	1/1	a0001	352	389	92	69	174	12	40	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	a0002	352	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	a0003	352	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	a0004	352	1	0	1	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	a0005	352	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	a0006	352	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSP90AA1_chr14_102075742_102092044	1/1	a0001	732	393	92	70	175	16	38	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	a0002	731	3	0	0	3	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	a0003	732	2	0	0	2	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AB1_chr6_44242101_44258883	1/1	a0001	724	430	96	80	188	16	48	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	a0002	724	2	0	2	0	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90B1_chr12_103925410_103952926	1/0	a0001	803	363	94	67	140	14	47	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	a0002	802	84	1	10	68	2	3	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/1	a0003	803	4	0	1	0	2	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	a0004	803	2	2	0	0	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	a0005	802	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	a0006	803	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	a0007	803	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	a0008	802	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	a0009	803	1	1	0	0	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSPA12A_chr10_116666192_116747566	1/1	a0001	675	315	83	55	131	10	34	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	a0002	675	2	0	1	0	1	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	a0003	675	1	0	0	0	1	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	a0004	675	1	0	0	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	a0005	675	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12B_chr20_3727685_3758111	1/0	a0001	686	382	61	72	183	18	47	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0002	686	22	20	0	0	0	2	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0003	686	4	4	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0004	686	3	3	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0005	686	3	3	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/1	a0006	686	2	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0007	686	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0008	686	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111