JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LCE2C_chr1_152670279_152681569	0/0	a0002	110	4	4	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	a0003	102	1	1	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	a0004	110	1	0	0	1	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	a0005	110	1	0	0	1	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2D_chr1_152658380_152669659	1/1	a0001	110	339	90	58	139	12	38	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	a0002	110	30	2	11	9	6	2	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	a0003	110	3	3	0	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	a0004	110	1	1	0	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	a0005	110	1	0	1	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE3A_chr1_152617834_152628103	1/1	a0001	89	398	77	78	189	12	40	copy fasta	LCE3A	chr1	152617834	152628103
LCE3A_chr1_152617834_152628103	0/0	a0002	89	11	11	0	0	0	0	copy fasta	LCE3A	chr1	152617834	152628103
LCE3A_chr1_152617834_152628103	0/0	a0003	89	1	0	0	1	0	0	copy fasta	LCE3A	chr1	152617834	152628103
LCE3B_chr1_152608811_152619098	1/1	a0001	95	259	77	44	100	8	28	copy fasta	LCE3B	chr1	152608811	152619098
LCE3B_chr1_152608811_152619098	0/0	a0002	95	1	1	0	0	0	0	copy fasta	LCE3B	chr1	152608811	152619098
LCE3C_chr1_152595234_152606086	1/1	a0001	94	53	23	4	20	2	2	copy fasta	LCE3C	chr1	152595234	152606086
LCE3C_chr1_152595234_152606086	0/0	a0002	94	3	3	0	0	0	0	copy fasta	LCE3C	chr1	152595234	152606086
LCE3C_chr1_152595234_152606086	0/0	a0003	94	2	2	0	0	0	0	copy fasta	LCE3C	chr1	152595234	152606086
LCE3D_chr1_152574381_152585516	1/1	a0001	92	257	71	45	102	7	30	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	a0002	92	76	13	15	33	3	12	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	a0003	92	4	4	0	0	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	a0004	92	2	0	0	2	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	a0005	92	1	1	0	0	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	a0006	92	1	1	0	0	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	a0007	92	1	0	0	1	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3E_chr1_152560654_152571780	1/1	a0001	92	457	94	71	228	16	46	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	a0002	92	2	2	0	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	a0003	92	1	1	0	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	a0004	92	1	1	0	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	a0005	92	1	0	1	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE4A_chr1_152703160_152714434	0/0	a0001	105	250	64	47	107	11	21	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	1/1	a0002	99	88	0	7	63	5	11	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	a0003	105	51	22	2	23	0	4	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	a0004	105	14	0	14	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	a0005	2	8	8	0	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	a0006	65	2	0	0	2	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	a0007	64	1	0	0	1	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	a0008	105	1	0	0	1	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	a0009	56	1	0	0	1	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE5A_chr1_152505803_152517177	0/0	a0001	118	228	25	49	120	11	23	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	1/1	a0002	118	190	67	25	70	7	19	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	a0003	78	7	0	0	7	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	a0004	118	5	5	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	a0005	118	2	2	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	a0006	118	1	1	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	a0007	118	1	0	0	1	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE6A_chr1_152837856_152848983	1/1	a0001	80	396	92	68	182	16	36	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	a0002	80	1	0	0	1	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	a0003	80	1	0	1	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	a0004	80	1	0	0	1	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	a0005	80	1	0	1	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983