JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRN4_chr20_6035546_6059060	0/0	a0017	740	1	0	0	1	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0018	740	1	1	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	a0019	740	1	0	0	0	0	1	copy fasta	LRRN4	chr20	6035546	6059060
LRRTM1_chr2_80296878_80309752	1/1	a0001	522	224	48	51	82	12	29	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	a0002	522	175	41	25	98	0	11	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	a0003	522	9	0	0	7	0	2	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	a0004	522	5	5	0	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	a0005	522	4	0	0	4	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	a0006	522	1	0	0	1	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM2_chr5_138863921_138880335	1/1	a0001	516	362	87	73	144	16	40	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	a0002	516	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	a0003	516	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM3_chr10_66921036_67106551	1/1	a0001	581	276	89	52	87	14	32	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	a0002	581	18	1	2	15	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM4_chr2_76742685_77527376	0/0	a0001	590	128	58	16	34	2	18	copy fasta	LRRTM4	chr2	76742685	77527376
LRSAM1_chr9_127446510_127508499	0/1	a0001	723	219	41	46	96	12	23	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	1/0	a0002	723	102	32	19	35	4	11	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0003	723	9	9	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0004	723	3	0	0	3	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0005	723	1	1	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0006	723	1	0	0	1	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0007	723	1	1	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0008	723	1	0	1	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0009	723	1	0	0	1	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0010	723	1	1	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	a0011	723	1	1	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRTM1_chr3_54913231_54933059	1/1	a0001	345	323	71	66	126	16	42	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	a0002	345	10	10	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	a0003	345	3	3	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	a0004	345	3	3	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	a0005	345	3	0	0	3	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	a0006	345	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	a0007	345	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	a0008	345	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	a0009	345	1	0	0	1	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM2_chr12_1815565_1841753	1/1	a0001	370	441	100	82	197	15	45	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	a0002	370	14	0	4	4	1	5	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	a0003	370	2	0	2	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	a0004	370	2	0	0	2	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	a0005	370	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	a0006	370	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	a0007	370	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRWD1_chr7_102459984_102478168	1/0	a0001	647	388	80	68	180	16	43	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/1	a0002	647	14	5	6	0	0	2	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0003	647	7	0	3	0	2	2	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0004	647	5	5	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0005	647	2	2	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0006	647	2	0	0	2	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0007	647	2	2	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	a0008	647	1	0	0	1	0	0	copy fasta	LRWD1	chr7	102459984	102478168