JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAGEC1_chrX_141898894_141914374	0/0	a0179	1247	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0180	1177	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0181	111	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0182	1212	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0183	1212	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0184	1142	1	0	0	0	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/1	a0185	1142	1	0	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0186	1212	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	a0187	1177	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC2_chrX_142197342_142210290	1/1	a0001	373	326	81	62	135	13	33	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	a0002	373	1	1	0	0	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	a0003	373	1	0	1	0	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	a0004	372	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	a0005	346	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	a0006	85	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC3_chrX_141833316_141902832	0/1	a0001	643	90	10	22	33	9	15	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0002	643	67	1	11	50	0	5	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	1/0	a0003	643	21	3	1	14	0	2	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0004	643	20	6	4	6	0	4	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0005	643	19	6	5	6	1	1	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0006	179	18	14	3	0	0	1	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0007	643	11	7	0	3	1	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0008	643	9	7	1	0	0	1	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0009	643	5	5	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0010	192	4	1	3	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0011	643	3	3	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0012	643	3	3	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0013	643	3	0	0	3	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0014	643	3	0	1	2	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0015	643	2	1	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0016	643	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0017	643	2	1	1	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0018	643	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0019	643	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0020	48	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0021	643	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0022	514	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0023	643	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0024	503	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0025	643	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0026	643	1	0	1	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0027	482	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0028	643	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0029	643	1	0	0	0	0	1	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0030	429	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	a0031	643	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGED1_chrX_51888623_51907354	1/1	a0001	778	264	76	47	107	11	21	copy fasta	MAGED1	chrX	51888623	51907354
MAGED1_chrX_51888623_51907354	0/0	a0002	201	1	0	0	1	0	0	copy fasta	MAGED1	chrX	51888623	51907354
MAGED2_chrX_54802745_54821015	1/1	a0001	606	305	71	59	132	11	30	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	a0002	606	7	7	0	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015