JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MANEA_chr6_95572535_95614452	0/0	a0008	462	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	a0009	462	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	a0010	462	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANF_chr3_51380291_51394397	1/1	a0001	182	384	78	68	184	14	38	copy fasta	MANF	chr3	51380291	51394397
MANSC1_chr12_12321056_12355242	1/1	a0001	431	293	49	59	151	8	24	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	a0002	431	21	0	7	8	4	2	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	a0003	431	4	0	0	4	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	a0004	431	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	a0005	139	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	a0006	431	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	a0007	431	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC4_chr12_27757427_27785236	0/0	a0001	340	174	39	39	71	6	19	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	1/1	a0002	340	165	46	26	70	7	14	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	a0003	340	65	1	9	46	3	6	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	a0004	340	1	0	0	1	0	0	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	a0005	207	1	0	0	0	0	1	copy fasta	MANSC4	chr12	27757427	27785236
MAOA_chrX_43651299_43751817	1/1	a0001	527	281	70	39	135	11	24	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	a0002	527	1	1	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	a0003	527	1	1	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOB_chrX_43761610_43887450	1/1	a0001	520	231	44	49	98	9	29	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	a0002	520	1	0	0	1	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	a0003	115	1	0	0	1	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	a0004	24	1	0	0	0	0	1	copy fasta	MAOB	chrX	43761610	43887450
MAP10_chr1_232800416_232814929	1/1	a0001	905	352	58	75	160	15	42	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0002	905	21	1	3	16	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0003	905	12	12	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0004	905	10	10	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0005	905	10	1	1	3	2	3	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0006	905	9	0	0	8	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0007	905	7	5	2	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0008	905	7	6	1	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0009	905	6	0	0	6	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0010	905	2	2	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0011	905	1	0	0	0	1	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0012	905	1	1	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0013	905	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0014	252	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0015	905	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0016	905	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0017	905	1	0	0	0	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0018	905	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0019	905	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	a0020	905	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP1A_chr15_43512608_43536611	1/1	a0001	2803	139	8	26	73	9	21	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0002	2803	118	42	9	59	0	8	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0003	2803	19	3	5	0	4	7	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0004	2802	17	0	1	16	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0005	2803	11	9	2	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0006	2803	5	3	1	0	0	1	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	a0007	2803	4	0	4	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611