JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MZT2B_chr2_130177262_130195727	0/0	a0003	158	2	2	0	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	a0004	158	1	0	1	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	a0005	158	1	0	0	1	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	a0006	158	1	0	1	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	a0007	158	1	1	0	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
N4BP1_chr16_48533726_48615180	1/1	a0001	896	317	80	57	133	14	31	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	a0002	896	4	0	1	3	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	a0003	896	2	2	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	a0004	896	1	0	0	0	0	1	copy fasta	N4BP1	chr16	48533726	48615180
N4BP2L1_chr13_32395723_32433130	1/1	a0001	243	430	92	72	206	12	46	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L2_chr13_32505292_32543795	1/1	a0001	583	364	70	66	171	12	43	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	a0002	583	21	19	2	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	a0003	583	3	3	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	a0004	583	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	a0005	583	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	a0006	583	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	a0007	583	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	a0008	583	1	0	0	0	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	a0009	583	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2_chr4_40051850_40163252	0/0	a0001	1770	144	35	23	69	2	15	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0002	1770	75	3	3	60	2	7	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	1/1	a0003	1770	51	24	14	6	3	2	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0004	1770	30	1	17	3	4	5	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0005	1770	20	3	3	11	0	3	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0006	1770	14	13	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0007	1770	8	8	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0008	1770	4	4	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0009	1770	3	0	1	0	1	1	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0010	1770	2	0	1	0	0	1	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0011	1770	2	1	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0012	1770	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0013	1770	1	0	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0014	1770	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0015	1770	1	0	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0016	1770	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0017	1770	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0018	1770	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0019	1770	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0020	1770	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0021	1770	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0022	1770	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0023	1770	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	a0024	1770	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP3_chr5_178108532_178131081	1/0	a0001	544	358	89	57	161	11	39	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/1	a0002	544	59	4	16	28	3	7	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	a0003	544	9	1	1	5	1	1	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	a0004	544	3	0	2	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	a0005	544	2	0	1	0	1	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	a0006	544	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	a0007	544	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081