JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PHF3_chr6_63630802_63731011	0/0	a0005	2039	2	2	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0006	2039	2	2	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0007	2039	1	0	0	0	0	1	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0008	2039	1	0	0	0	1	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0009	2039	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/1	a0010	2039	1	0	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0011	2039	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0012	2039	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0013	2039	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0014	2039	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0015	2039	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0016	2039	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0017	2039	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF5A_chr22_41454717_41473692	1/1	a0001	110	408	96	72	186	12	40	copy fasta	PHF5A	chr22	41454717	41473692
PHF6_chrX_134368312_134433790	1/1	a0001	365	283	58	51	135	9	28	copy fasta	PHF6	chrX	134368312	134433790
PHF7_chr3_52405660_52428641	1/1	a0001	381	356	81	77	152	12	32	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	a0002	381	5	4	1	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	a0003	381	1	1	0	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF8_chrX_53931680_54049473	1/1	a0001	1024	177	58	33	61	5	18	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	a0002	1023	4	4	0	0	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	a0003	23	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	a0004	1024	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	a0005	191	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	a0006	101	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	a0007	79	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHGDH_chr1_119706934_119749215	1/1	a0001	533	397	93	72	168	14	48	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	a0002	533	1	1	0	0	0	0	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	a0003	533	1	0	1	0	0	0	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	a0004	533	1	0	1	0	0	0	copy fasta	PHGDH	chr1	119706934	119749215
PHGR1_chr15_40346033_40361434	1/1	a0001	82	300	54	62	139	15	28	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	a0002	93	85	38	5	30	0	12	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	a0003	82	34	0	5	22	3	4	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	a0004	82	16	0	0	16	0	0	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	a0005	82	1	0	0	1	0	0	copy fasta	PHGR1	chr15	40346033	40361434
PHIP_chr6_78929419_79083254	0/1	a0001	1821	178	72	24	62	2	17	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	a0002	1821	85	14	16	39	6	10	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	a0003	1821	33	2	5	19	4	3	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	1/0	a0004	1821	18	5	9	0	0	3	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	a0005	1821	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	a0006	1821	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	a0007	1821	1	0	0	0	0	1	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	a0008	1821	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHKA1_chrX_72573814_72719306	1/1	a0001	1223	230	66	34	97	5	26	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	a0002	1223	2	2	0	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	a0003	408	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	a0004	1223	1	0	1	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	a0005	1223	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	a0006	79	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	a0007	81	1	0	1	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA2_chrX_18887298_18989114	1/1	a0001	1235	187	62	24	76	5	18	copy fasta	PHKA2	chrX	18887298	18989114