JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RCCD1_chr15_90949884_90968125	0/0	a0002	376	118	6	20	78	1	13	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	a0003	376	2	2	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	a0004	376	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	a0005	376	1	0	0	0	1	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	a0006	376	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCE1_chr11_66838441_66851552	1/1	a0001	329	394	75	70	187	14	46	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	a0002	329	17	15	2	0	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	a0003	329	1	0	0	1	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCHY1_chr4_75474033_75519403	1/1	a0001	261	406	88	68	196	14	38	copy fasta	RCHY1	chr4	75474033	75519403
RCL1_chr9_4787944_4866066	1/1	a0001	373	380	91	67	160	16	44	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	a0002	373	3	3	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	a0003	373	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	a0004	373	1	0	1	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	a0005	373	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCN1_chr11_32086074_32110722	1/1	a0001	331	400	93	71	178	16	40	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	a0002	331	2	0	0	2	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	a0003	331	1	1	0	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	a0004	331	1	0	1	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN2_chr15_76926749_76959393	1/1	a0001	317	419	95	70	198	16	38	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	a0002	317	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	a0003	317	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	a0004	317	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN3_chr19_49523003_49548633	1/1	a0001	328	343	77	66	141	16	41	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	a0002	328	25	9	5	9	0	2	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	a0003	328	6	4	2	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	a0004	328	2	2	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	a0005	328	1	1	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	a0006	328	1	0	1	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	a0007	328	1	1	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	a0008	328	1	0	0	0	0	1	copy fasta	RCN3	chr19	49523003	49548633
RCOR1_chr14_102587649_102735561	1/1	a0001	485	290	88	67	93	14	26	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	a0002	485	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	a0003	485	1	0	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR2_chr11_63906230_63922164	0/1	a0001	523	304	77	62	104	16	44	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	1/0	a0002	523	18	15	2	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	a0003	523	1	0	0	1	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	a0004	523	1	0	0	1	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR3_chr1_211254366_211321385	1/1	a0001	553	324	84	54	134	10	40	copy fasta	RCOR3	chr1	211254366	211321385
RCSD1_chr1_167625232_167713696	1/1	a0001	416	342	85	55	148	14	38	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	a0002	416	3	3	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	a0003	416	2	2	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	a0004	416	1	0	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	a0005	416	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	a0006	416	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCVRN_chr17_9891320_9910271	1/1	a0001	200	468	91	88	222	17	48	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	a0002	200	9	9	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	a0003	200	2	0	0	2	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	a0004	200	1	0	0	0	1	0	copy fasta	RCVRN	chr17	9891320	9910271
RD3L_chr14_103935426_103947529	1/1	a0001	198	399	92	65	187	12	41	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	a0002	198	19	0	4	15	0	0	copy fasta	RD3L	chr14	103935426	103947529