JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLFN11_chr17_35345305_35378621	0/0	a0028	901	1	0	0	0	1	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0029	901	1	0	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0030	901	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0031	901	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN12L_chr17_35459254_35542678	0/1	a0001	612	158	51	32	56	9	9	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	1/0	a0002	612	67	10	12	33	3	8	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0003	612	46	13	12	5	1	15	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0004	612	41	0	3	36	0	2	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0005	163	34	9	1	24	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0006	612	5	5	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0007	612	3	3	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0008	612	2	0	1	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0009	612	1	0	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0010	612	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0011	612	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	a0012	612	1	0	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12_chr17_35405922_35437500	1/0	a0001	578	206	34	25	127	8	11	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/1	a0002	578	135	21	38	53	7	15	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	a0003	578	61	27	6	6	1	21	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	a0004	578	12	3	1	8	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	a0005	578	5	5	0	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	a0006	578	4	0	0	4	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	a0007	578	1	1	0	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	a0008	578	1	1	0	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	a0009	578	1	0	0	0	0	1	copy fasta	SLFN12	chr17	35405922	35437500
SLFN13_chr17_35430096_35453766	1/1	a0001	897	84	4	32	33	4	9	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0002	13	59	9	5	42	2	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0003	897	50	12	14	23	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0004	897	36	22	10	0	3	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0005	897	31	0	3	26	0	2	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0006	897	29	6	1	16	1	5	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0007	897	23	6	1	10	2	4	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0008	897	22	5	1	16	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0009	897	19	1	3	0	0	15	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0010	897	17	2	0	14	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0011	897	13	1	1	10	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0012	897	11	0	7	0	1	3	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0013	897	8	8	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0014	897	6	0	0	3	0	3	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0015	897	5	5	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0016	897	4	0	0	4	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0017	897	3	0	0	3	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0018	897	3	0	1	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0019	897	3	3	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0020	897	2	0	0	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0021	897	2	0	0	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0022	897	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0023	897	2	0	0	1	1	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0024	897	2	0	0	0	2	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0025	897	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766