JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLFN13_chr17_35430096_35453766	0/0	a0026	897	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0027	897	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0028	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0029	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0030	897	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0031	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0032	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0033	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0034	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0035	897	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0036	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0037	897	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0038	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0039	897	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0040	897	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	a0041	897	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN14_chr17_35538985_35565819	0/0	a0001	912	135	28	27	64	4	12	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0002	912	113	17	15	68	4	9	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0003	912	49	15	1	31	0	2	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	1/0	a0004	912	44	0	7	30	1	5	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/1	a0005	912	33	5	10	4	5	8	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0006	912	14	14	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0007	912	11	0	4	0	2	5	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0008	912	8	6	2	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0009	912	6	0	1	5	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0010	912	3	3	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0011	912	2	2	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0012	485	2	0	0	2	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0013	912	1	0	1	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0014	912	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0015	912	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0016	912	1	0	0	1	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0017	912	1	0	0	0	0	1	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0018	912	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0019	912	1	0	0	1	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	a0020	912	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN5_chr17_35238072_35278655	1/1	a0001	891	258	58	38	132	4	24	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0002	891	83	16	13	47	0	7	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0003	891	57	3	23	14	7	10	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0004	891	24	0	1	23	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0005	891	5	5	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0006	891	3	1	1	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0007	891	3	0	0	0	0	3	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0008	891	3	3	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0009	891	2	2	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0010	891	2	2	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0011	891	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0012	891	1	0	0	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0013	891	1	0	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0014	754	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655