JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SP1_chr12_53375176_53421446	0/0	a0003	785	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	a0004	785	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	a0005	785	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	a0006	790	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP2_chr17_47891236_47933957	1/1	a0001	613	321	85	61	123	15	35	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	a0002	613	35	2	16	10	1	6	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	a0003	613	4	3	1	0	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	a0004	613	4	0	0	4	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	a0005	606	1	0	0	0	0	1	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	a0006	613	1	0	0	1	0	0	copy fasta	SP2	chr17	47891236	47933957
SP3_chr2_173895775_173970373	1/1	a0001	781	294	92	69	82	13	36	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	a0002	781	58	0	5	48	1	4	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	a0003	781	4	0	0	4	0	0	copy fasta	SP3	chr2	173895775	173970373
SP4_chr7_21423083_21519822	1/1	a0001	784	409	90	66	193	12	46	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	a0002	784	7	1	6	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	a0003	784	6	0	2	4	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	a0004	784	3	0	0	3	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	a0005	784	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP5_chr2_170710337_170723078	1/0	a0001	398	245	46	48	106	11	33	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/1	a0002	398	203	53	32	96	7	14	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	a0003	398	2	0	2	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	a0004	398	1	1	0	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	a0005	398	1	0	0	0	0	1	copy fasta	SP5	chr2	170710337	170723078
SP6_chr17_47839908_47856163	1/1	a0001	376	388	95	78	155	16	42	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	a0002	376	1	1	0	0	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	a0003	376	1	0	0	1	0	0	copy fasta	SP6	chr17	47839908	47856163
SP7_chr12_53321575_53341354	1/1	a0001	431	366	86	71	155	12	40	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	a0002	431	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	a0003	431	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	a0004	300	1	0	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	a0005	431	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP8_chr7_20777279_20791886	1/1	a0001	508	400	93	71	176	14	44	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	a0002	507	13	2	5	0	2	4	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	a0003	508	3	3	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP9_chr2_174329954_174343500	1/1	a0001	484	373	91	72	143	16	49	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	a0002	479	19	0	1	18	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	a0003	485	6	6	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	a0004	484	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	a0005	479	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	a0006	489	1	0	0	0	0	1	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	a0007	484	1	1	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	a0008	484	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	a0009	484	1	0	1	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SPA17_chr11_124668904_124702518	1/1	a0001	151	355	85	60	152	14	42	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	a0002	151	1	1	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPAAR_chr9_35904490_35916686	1/1	a0001	75	418	92	80	194	16	34	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	a0002	75	2	0	0	2	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPACA1_chr6_88042841_88071838	1/1	a0001	294	325	85	60	128	16	34	copy fasta	SPACA1	chr6	88042841	88071838
SPACA1_chr6_88042841_88071838	0/0	a0002	294	2	0	0	2	0	0	copy fasta	SPACA1	chr6	88042841	88071838
SPACA1_chr6_88042841_88071838	0/0	a0003	294	1	1	0	0	0	0	copy fasta	SPACA1	chr6	88042841	88071838