JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPDYA_chr2_28805834_28855610	1/1	a0001	313	332	73	64	137	18	38	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	a0002	313	5	5	0	0	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	a0003	313	1	0	0	1	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYC_chr11_65165233_65178374	1/1	a0001	274	437	92	73	210	18	42	copy fasta	SPDYC	chr11	65165233	65178374
SPDYC_chr11_65165233_65178374	0/0	a0002	274	2	2	0	0	0	0	copy fasta	SPDYC	chr11	65165233	65178374
SPDYC_chr11_65165233_65178374	0/0	a0003	274	2	0	0	0	0	2	copy fasta	SPDYC	chr11	65165233	65178374
SPDYC_chr11_65165233_65178374	0/0	a0004	274	1	0	1	0	0	0	copy fasta	SPDYC	chr11	65165233	65178374
SPDYE10_chr7_73099008_73160431	0/0	a0001	265	152	24	38	69	3	18	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0002	265	40	13	6	14	2	5	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0003	265	14	13	1	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0004	265	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0005	265	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0006	265	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0007	265	1	0	0	0	0	1	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0008	265	1	0	1	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0009	265	1	0	0	0	1	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	a0010	265	1	0	0	1	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE11_chr7_73042862_73062911	0/0	a0001	265	8	4	2	2	0	0	copy fasta	SPDYE11	chr7	73042862	73062911
SPDYE12_chr7_74899289_74920078	1/1	a0001	265	321	91	58	121	8	41	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	a0002	265	16	0	9	7	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	a0003	265	9	1	5	2	0	1	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	a0004	265	2	0	0	0	0	2	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	a0005	265	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	a0006	265	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE13_chr7_75275790_75294501	0/0	a0001	265	18	16	0	0	0	2	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	a0002	265	1	1	0	0	0	0	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	a0003	265	1	1	0	0	0	0	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE14_chr7_75302376_75322429	0/0	a0001	265	2	2	0	0	0	0	copy fasta	SPDYE14	chr7	75302376	75322429
SPDYE16_chr7_76526313_76548297	1/0	a0001	352	133	13	30	66	6	17	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0002	352	86	19	26	27	4	10	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0003	352	21	10	5	4	1	1	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0004	352	3	3	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0005	352	3	2	1	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0006	352	2	2	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0007	352	2	2	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0008	352	1	1	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0009	352	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0010	352	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0011	352	1	0	0	0	1	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	a0012	352	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE17_chr7_77017306_77037361	0/0	a0001	265	133	50	21	44	7	11	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0002	265	86	3	19	50	5	9	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	1/0	a0003	265	58	8	18	14	3	14	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0004	265	6	6	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0005	265	4	4	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0006	265	2	0	1	0	1	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0007	265	1	1	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0008	265	1	0	0	0	0	1	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0009	265	1	0	1	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0010	265	1	0	0	1	0	0	copy fasta	SPDYE17	chr7	77017306	77037361