JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SSU72L5_chr11_4228217_4239287	0/0	a0009	194	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0010	194	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0011	194	1	0	0	1	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0012	194	1	0	0	1	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L6_chr7_124471317_124482664	1/1	a0001	194	344	89	71	139	14	29	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	a0002	194	115	7	9	86	0	13	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	a0003	194	4	0	0	4	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	a0004	194	2	0	0	2	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	a0005	194	1	0	0	1	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72_chr1_1536673_1579863	1/1	a0001	194	385	83	76	160	14	50	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	a0002	194	1	1	0	0	0	0	copy fasta	SSU72	chr1	1536673	1579863
SSUH2_chr3_8614386_8649798	1/1	a0001	375	439	92	77	201	18	49	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0002	375	5	5	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0003	375	3	0	3	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0004	375	2	2	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0005	375	1	1	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0006	375	1	0	0	0	0	1	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0007	375	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0008	375	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0009	375	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0010	375	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	a0011	375	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSX1_chrX_48250392_48272444	1/1	a0001	188	317	62	50	157	13	33	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	a0002	188	13	13	0	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	a0003	188	2	0	2	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	a0004	188	2	0	2	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	a0005	188	2	0	2	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	a0006	188	1	1	0	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	a0007	179	1	0	0	0	0	1	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	a0008	148	1	0	0	1	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX2B_chrX_52746252_52766536	0/0	a0001	188	52	13	19	12	1	7	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	a0002	39	1	0	0	1	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	a0003	98	1	0	0	1	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	a0004	188	1	1	0	0	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2IP_chr1_84638706_84695461	1/1	a0001	614	170	61	33	51	6	17	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	a0002	614	145	26	27	73	4	15	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	a0003	614	1	0	1	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	a0004	614	1	0	1	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	a0005	614	1	0	0	1	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	a0006	614	1	0	0	1	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	a0007	614	1	1	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2_chrX_52691896_52712178	0/0	a0001	188	94	22	25	30	3	14	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	a0002	188	2	0	0	2	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	a0003	169	1	1	0	0	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	a0004	188	1	1	0	0	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX3_chrX_48341427_48361703	1/1	a0001	188	317	65	59	145	12	34	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	a0002	188	12	11	1	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	a0003	98	1	0	0	1	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	a0004	188	1	0	0	0	1	0	copy fasta	SSX3	chrX	48341427	48361703
SSX4B_chrX_48397082_48416960	0/0	a0001	188	178	44	29	72	8	25	copy fasta	SSX4B	chrX	48397082	48416960