JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TLR6_chr4_38817897_38861817	0/0	a0010	796	2	0	0	0	0	2	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0011	796	2	2	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0012	796	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0013	796	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0014	796	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR7_chrX_12862072_12895361	1/1	a0001	1049	292	65	44	145	7	29	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	a0002	1049	24	10	10	0	2	2	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	a0003	1049	1	0	0	0	0	1	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	a0004	118	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	a0005	1049	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	a0006	1049	1	1	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	a0007	789	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR8_chrX_12901620_12928169	0/0	a0001	1038	158	19	28	91	4	16	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	1/1	a0002	1041	127	44	30	30	5	16	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	a0003	1041	8	7	1	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	a0004	1038	3	3	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	a0005	1038	2	1	1	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	a0006	1041	1	0	0	1	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	a0007	1041	1	0	0	1	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	a0008	1041	1	1	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	a0009	1038	1	0	0	1	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	a0010	1038	1	1	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR9_chr3_52216080_52230645	1/1	a0001	1032	341	74	76	140	16	33	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0002	1032	10	10	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0003	1032	10	7	0	1	0	2	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0004	1032	3	0	0	0	0	3	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0005	1032	2	0	0	2	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0006	1032	1	0	0	1	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0007	1032	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0008	1032	1	0	0	1	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0009	1032	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0010	1032	1	0	0	1	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	a0011	1032	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLX1_chr10_101126300_101142789	1/1	a0001	330	461	94	86	213	18	48	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	a0002	330	2	0	2	0	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	a0003	330	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	a0004	330	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	a0005	330	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	a0006	330	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	a0007	330	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX2_chr2_74509450_74522148	1/1	a0001	284	370	96	71	159	10	32	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	a0002	284	1	0	0	1	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	a0003	284	1	0	1	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX3_chr5_171304248_171317139	1/1	a0001	291	393	88	78	168	16	41	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	a0002	291	3	2	1	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	a0003	291	2	2	0	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	a0004	291	2	0	0	2	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	a0005	291	1	0	1	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	a0006	291	1	0	0	0	0	1	copy fasta	TLX3	chr5	171304248	171317139
TM2D1_chr1_61676046_61730141	1/1	a0001	207	385	91	70	166	14	42	copy fasta	TM2D1	chr1	61676046	61730141