JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM44_chr11_35657775_35823007	0/0	a0002	344	1	0	0	0	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	a0003	344	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM45_chr1_117106060_117126749	1/1	a0001	580	147	22	27	74	6	16	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0002	580	65	24	23	4	5	9	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0003	580	56	31	10	10	2	3	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0004	580	40	5	12	18	2	3	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0005	580	30	3	0	22	0	5	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0006	580	5	5	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0007	580	4	4	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0008	580	3	0	2	0	1	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0009	580	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	a0010	580	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM46_chr1_155168849_155189970	1/1	a0001	759	342	95	61	126	16	42	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	a0002	759	3	3	0	0	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	a0003	759	1	0	1	0	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	a0004	759	1	0	0	1	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	a0005	759	1	0	0	1	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM47_chr17_75869164_75883581	1/1	a0001	638	290	59	63	129	11	26	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	a0002	638	72	31	8	24	3	6	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	a0003	638	6	6	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	a0004	638	2	0	2	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	a0005	638	1	1	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	a0006	638	1	0	0	1	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	a0007	638	1	0	1	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	a0008	638	1	1	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM48_chr11_55257155_55276114	0/0	a0000	0	20	9	2	9	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	1/1	a0001	224	218	56	50	80	6	24	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	a0002	224	25	9	4	7	2	3	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	a0003	224	4	0	0	4	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	a0004	224	2	0	0	2	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	a0005	224	2	0	0	2	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	a0006	224	1	0	0	0	0	1	copy fasta	TRIM48	chr11	55257155	55276114
TRIM49B_chr11_49023823_49043155	0/1	a0001	452	289	72	60	125	9	22	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	1/0	a0002	452	121	5	18	70	5	22	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	a0003	452	7	7	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	a0004	452	5	5	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	a0005	452	3	3	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	a0006	434	3	3	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	a0007	452	1	1	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	a0008	452	1	0	0	1	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49C_chr11_90026106_90047025	1/1	a0001	452	104	6	17	60	8	11	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	a0002	452	10	2	2	3	0	3	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	a0003	452	3	0	3	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	a0004	452	1	0	1	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	a0005	452	1	0	1	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	a0006	452	1	0	0	1	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49D1_chr11_89906409_89927245	0/0	a0001	452	112	24	25	49	4	10	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	1/1	a0002	452	71	20	17	20	2	10	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	a0003	452	11	0	0	11	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	a0004	452	5	5	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245