JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BPI_chr20_38299156_38342505	0/0	a0024	483	2	2	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0025	483	2	0	2	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0026	483	2	1	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0027	483	2	2	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0028	483	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0029	483	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0030	483	1	0	0	0	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0031	483	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0032	483	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0033	483	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0034	483	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0035	483	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0036	483	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0037	483	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0038	483	1	0	0	0	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0039	483	1	0	0	0	1	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0040	483	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPNT1_chr1_220052482_220094788	1/1	a0001	308	420	93	76	190	16	43	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	a0002	308	1	0	1	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	a0003	308	1	0	1	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	a0004	308	1	1	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	a0005	308	1	0	0	0	0	1	copy fasta	BPNT1	chr1	220052482	220094788
BPNT2_chr8_56952931_56998867	1/1	a0001	359	352	75	55	172	10	38	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	a0002	359	1	0	1	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	a0003	359	1	0	0	0	1	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	a0004	359	1	0	0	0	1	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	a0005	359	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPTF_chr17_67820503_67989378	1/1	a0001	2920	147	49	30	46	4	16	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0002	2923	91	13	15	53	1	9	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0003	2920	14	11	3	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0004	2923	7	2	0	5	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0005	2923	4	3	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0006	2923	2	2	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0007	2923	1	0	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0008	2920	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0009	2923	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0010	2920	1	0	0	0	0	1	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0011	2920	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0012	2926	1	0	0	0	1	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0013	2920	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0014	2920	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	a0015	2923	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPY2B_chrY_24613004_24644207	0/0	a0001	106	2	0	0	2	0	0	copy fasta	BPY2B	chrY	24613004	24644207
BPY2C_chrY_25025901_25057104	0/0	a0001	106	1	0	0	1	0	0	copy fasta	BPY2C	chrY	25025901	25057104
BPY2_chrY_22979263_23010465	0/0	a0001	106	49	2	14	18	4	11	copy fasta	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	a0002	33	1	0	0	1	0	0	copy fasta	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	a0003	34	1	0	0	1	0	0	copy fasta	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	a0004	79	1	0	0	1	0	0	copy fasta	BPY2	chrY	22979263	23010465
BRAF_chr7_140714337_140929929	1/1	a0001	807	188	80	30	44	4	28	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	a0002	807	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929