JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L7_chr8_12127417_12139099	0/0	a0006	530	5	3	1	0	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0007	530	3	0	0	0	0	3	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0008	530	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0009	530	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0010	530	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0011	530	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0012	530	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0013	530	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0014	530	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0015	530	1	0	0	0	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0016	530	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0017	530	1	0	0	0	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0018	530	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0019	530	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0020	530	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0021	530	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0022	530	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0023	530	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0024	530	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0025	530	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0026	530	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	a0027	31	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L8_chr8_7966661_7978253	1/0	a0001	530	3	2	0	0	0	0	copy fasta	USP17L8	chr8	7966661	7978253
USP18_chr22_18145170_18182397	1/1	a0001	372	259	54	46	138	2	17	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0002	372	101	33	20	28	4	16	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0003	372	5	0	0	0	0	5	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0004	372	3	2	0	1	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0005	372	3	3	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0006	372	1	0	0	1	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0007	372	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0008	372	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0009	372	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	a0010	372	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP19_chr3_49103050_49125823	1/1	a0001	1384	251	76	50	70	13	40	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0002	1384	32	1	6	19	3	3	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0003	1384	9	0	0	9	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0004	1384	7	7	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0005	1384	1	0	1	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0006	1384	1	0	1	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0007	1384	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0008	1384	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0009	1384	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0010	1384	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0011	1384	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0012	1384	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0013	1384	1	0	0	0	0	1	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0014	1384	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	a0015	1384	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP1_chr1_62432049_62456804	1/1	a0001	785	412	90	74	186	18	42	copy fasta	USP1	chr1	62432049	62456804
USP20_chr9_129830458_129886828	0/1	a0001	913	300	54	60	127	17	41	copy fasta	USP20	chr9	129830458	129886828