JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VCX_chrX_7838171_7849143	0/0	a0050	196	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0051	46	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0052	206	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0053	206	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0054	186	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0055	65	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0056	206	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0057	236	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0058	246	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0059	256	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0060	206	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0061	226	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0062	246	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0063	236	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0064	216	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0065	206	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0066	196	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0067	216	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0068	176	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0069	216	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0070	206	1	0	0	0	1	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0071	186	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0072	246	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0073	216	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0074	196	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0075	186	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0076	236	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0077	186	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0078	206	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0079	216	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0080	146	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0081	216	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0082	246	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0083	226	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0084	206	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0085	216	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0086	196	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0087	196	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0088	186	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0089	206	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0090	196	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0091	196	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0092	246	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	a0093	206	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCY1B_chrY_14051227_14061958	0/0	a0001	125	127	18	20	68	5	16	copy fasta	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	a0002	125	1	0	0	1	0	0	copy fasta	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	a0003	114	1	0	0	1	0	0	copy fasta	VCY1B	chrY	14051227	14061958
VCY_chrY_13980772_13991473	0/0	a0001	125	121	17	20	64	5	15	copy fasta	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	a0002	125	1	0	0	1	0	0	copy fasta	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	a0003	115	1	1	0	0	0	0	copy fasta	VCY	chrY	13980772	13991473