Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACKR3_chr2_236564825_236587354	1/1	a0001	362	383	93	66	167	13	42	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	a0002	362	5	5	0	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	a0003	362	2	2	0	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	a0004	362	1	0	0	0	1	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	a0005	362	1	0	0	1	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	a0006	362	1	0	0	1	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	a0007	355	1	0	0	1	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR4_chr3_132592270_132607644	1/1	a0001	350	353	89	62	156	14	30	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	a0002	350	3	3	0	0	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	a0003	350	1	0	0	1	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	a0004	350	1	0	0	1	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACLY_chr17_41861918_41923951	1/1	a0001	1101	250	71	64	79	9	25	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	a0002	1101	39	9	6	18	1	5	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	a0003	1101	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	a0004	1101	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	a0005	1101	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	a0006	1101	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	a0007	1101	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACMSD_chr2_134833616_134907034	1/1	a0001	336	369	75	66	178	10	38	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	a0002	336	4	4	0	0	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	a0003	49	3	0	0	3	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	a0004	336	2	0	0	2	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	a0005	336	1	0	0	1	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	a0006	336	1	1	0	0	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	a0007	336	1	0	0	1	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	a0008	336	1	0	0	1	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACO1_chr9_32379643_32459769	1/1	a0001	889	346	75	63	145	16	45	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0002	889	13	11	2	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0003	889	8	0	0	8	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0004	889	3	3	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0005	889	2	2	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0006	889	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0007	889	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0008	889	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0009	889	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0010	889	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0011	889	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0012	889	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0013	889	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0014	889	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	a0015	889	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO2_chr22_41464117_41533974	1/1	a0001	780	331	89	58	138	12	32	copy fasta	ACO2	chr22	41464117	41533974
ACO2_chr22_41464117_41533974	0/0	a0002	780	1	0	0	1	0	0	copy fasta	ACO2	chr22	41464117	41533974
ACO2_chr22_41464117_41533974	0/0	a0003	780	1	1	0	0	0	0	copy fasta	ACO2	chr22	41464117	41533974
ACO2_chr22_41464117_41533974	0/0	a0004	780	1	0	0	1	0	0	copy fasta	ACO2	chr22	41464117	41533974
ACOD1_chr13_76943511_76963638	1/1	a0001	481	408	71	79	202	15	39	copy fasta	ACOD1	chr13	76943511	76963638
ACOD1_chr13_76943511_76963638	0/0	a0002	481	20	17	3	0	0	0	copy fasta	ACOD1	chr13	76943511	76963638
ACOD1_chr13_76943511_76963638	0/0	a0003	481	2	2	0	0	0	0	copy fasta	ACOD1	chr13	76943511	76963638
ACOD1_chr13_76943511_76963638	0/0	a0004	481	1	0	0	0	1	0	copy fasta	ACOD1	chr13	76943511	76963638
ACOD1_chr13_76943511_76963638	0/0	a0005	481	1	1	0	0	0	0	copy fasta	ACOD1	chr13	76943511	76963638