Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AAK1_chr2_69452997_69648739	0/1	a0001	961	184	61	27	78	3	14	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	a0002	960	96	16	20	49	3	8	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	a0003	960	4	2	2	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	a0004	961	4	4	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	a0005	961	3	0	3	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	a0006	960	2	0	0	2	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	a0007	961	2	0	0	2	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	1/0	a0008	961	1	0	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	a0009	960	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	a0010	961	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAMDC_chr11_77816144_77877352	1/1	a0001	122	312	73	53	135	15	34	copy fasta	AAMDC	chr11	77816144	77877352
AAMDC_chr11_77816144_77877352	0/0	a0002	122	69	13	9	46	1	0	copy fasta	AAMDC	chr11	77816144	77877352
AAMDC_chr11_77816144_77877352	0/0	a0003	122	1	0	0	1	0	0	copy fasta	AAMDC	chr11	77816144	77877352
AAMP_chr2_218259129_218275137	1/1	a0001	434	376	92	75	154	16	37	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	a0002	434	18	0	5	12	0	1	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	a0003	434	2	0	0	2	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	a0004	434	2	0	0	2	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	a0005	434	1	1	0	0	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	a0006	434	1	1	0	0	0	0	copy fasta	AAMP	chr2	218259129	218275137
AANAT_chr17_76462603_76475117	1/1	a0001	207	415	89	77	186	16	45	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	a0002	207	3	2	1	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	a0003	207	3	0	0	3	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	a0004	207	1	0	0	0	0	1	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	a0005	207	1	0	0	1	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	a0006	207	1	0	0	1	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	a0007	105	1	0	0	1	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	a0008	207	1	1	0	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AAR2_chr20_36231478_36261933	1/1	a0001	384	295	82	61	114	10	26	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	a0002	384	1	0	0	1	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	a0003	384	1	0	1	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	a0004	384	1	0	0	1	0	0	copy fasta	AAR2	chr20	36231478	36261933
AARD_chr8_116933207_116949487	1/1	a0001	155	306	54	49	168	7	26	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	a0002	155	117	34	24	31	6	22	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	a0003	155	9	0	0	9	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	a0004	155	4	0	3	0	1	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	a0005	153	4	4	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	a0006	155	2	2	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARS1_chr16_70247298_70294506	1/1	a0001	968	325	52	72	147	14	38	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0002	968	24	23	1	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0003	968	4	4	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0004	968	2	0	1	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0005	968	1	1	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0006	968	1	1	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0007	968	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0008	968	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0009	968	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0010	968	1	0	0	1	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	a0011	968	1	1	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS2_chr6_44293731_44318347	0/1	a0001	985	331	44	63	178	13	32	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	1/0	a0002	985	37	32	1	1	0	2	copy fasta	AARS2	chr6	44293731	44318347