JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CT47A3_chrX_120967746_120981068	0/0	a0000	0	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0001	288	186	55	42	56	6	27	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0002	288	2	2	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0003	288	2	2	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0004	288	2	0	0	2	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0005	288	1	0	0	1	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0006	113	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0007	288	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0008	288	1	0	0	0	0	1	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0009	202	1	0	0	1	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0010	288	1	0	0	1	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0011	288	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	a0012	31	1	0	0	0	1	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A4_chrX_120962886_120976208	0/0	a0001	288	148	49	32	44	6	17	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0002	288	5	5	0	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0003	141	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0004	202	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0005	281	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0006	288	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0007	288	1	1	0	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0008	288	1	1	0	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0009	288	1	0	1	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0010	202	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0011	202	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0012	66	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	a0013	66	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A5_chrX_120958026_120971348	0/0	a0001	288	114	28	33	29	8	16	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	a0002	288	7	6	1	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	a0003	288	3	0	2	1	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	a0004	288	1	0	0	0	0	1	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	a0005	202	1	0	1	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	a0006	288	1	0	0	1	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	a0007	288	1	1	0	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	a0008	288	1	1	0	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	a0009	288	1	1	0	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A6_chrX_120953165_120966487	0/0	a0001	288	96	23	32	19	8	14	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0002	288	6	5	1	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0003	31	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0004	66	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0005	288	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0006	288	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0007	288	1	0	0	0	0	1	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0008	288	1	0	1	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0009	288	1	1	0	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	a0010	287	1	1	0	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A7_chrX_120948282_120961600	1/0	a0001	288	18	2	1	6	2	6	copy fasta	CT47A7	chrX	120948282	120961600
CT47A7_chrX_120948282_120961600	0/0	a0002	299	1	0	0	0	1	0	copy fasta	CT47A7	chrX	120948282	120961600
CT47A8_chrX_120943422_120956744	0/0	a0001	288	5	0	0	3	1	1	copy fasta	CT47A8	chrX	120943422	120956744
CT47A8_chrX_120943422_120956744	0/0	a0002	288	1	0	0	1	0	0	copy fasta	CT47A8	chrX	120943422	120956744
CT47A8_chrX_120943422_120956744	0/0	a0003	202	1	0	0	0	0	1	copy fasta	CT47A8	chrX	120943422	120956744