JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTR9_chr11_10746246_10784746	1/1	a0001	1173	398	94	67	177	18	40	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	a0002	1173	3	2	1	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	a0003	1173	1	0	0	1	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	a0004	1173	1	1	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	a0005	1173	1	0	0	1	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	a0006	1173	1	0	0	1	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	a0007	1173	1	1	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTRB1_chr16_75213988_75229924	1/1	a0001	263	2	0	0	0	0	0	copy fasta	CTRB1	chr16	75213988	75229924
CTRB2_chr16_75199103_75212161	1/1	a0001	263	6	0	4	0	0	0	copy fasta	CTRB2	chr16	75199103	75212161
CTRC_chr1_15433443_15454242	1/1	a0001	268	413	79	77	193	16	46	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	a0002	268	14	13	1	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	a0003	268	1	0	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRL_chr16_67924574_67936862	1/1	a0001	264	189	34	45	85	2	21	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	a0002	264	98	43	21	23	2	9	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	a0003	264	13	13	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	a0004	264	3	3	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	a0005	264	3	0	0	3	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	a0006	264	3	3	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	a0007	264	1	1	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	a0008	264	1	1	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	a0009	264	1	0	0	1	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTSA_chr20_45886335_45903820	0/1	a0001	479	311	68	56	146	9	31	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	1/0	a0002	480	117	23	15	56	7	15	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	a0003	150	1	1	0	0	0	0	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	a0004	479	1	0	1	0	0	0	copy fasta	CTSA	chr20	45886335	45903820
CTSB_chr8_11837524_11873087	1/0	a0001	339	226	51	44	91	11	28	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0002	339	161	26	23	91	2	19	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0003	339	17	17	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/1	a0004	339	16	2	10	0	3	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0005	339	7	0	0	7	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0006	339	3	0	0	3	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0007	339	2	0	0	2	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0008	339	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0009	339	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0010	339	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0011	339	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0012	339	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	a0013	339	1	0	0	0	0	1	copy fasta	CTSB	chr8	11837524	11873087
CTSC_chr11_88288592_88342736	0/1	a0001	463	367	80	60	177	11	38	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	a0002	463	47	11	8	25	1	2	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	1/0	a0003	463	18	4	8	0	4	1	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	a0004	463	1	0	0	0	0	1	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	a0005	463	1	1	0	0	0	0	copy fasta	CTSC	chr11	88288592	88342736
CTSD_chr11_1747755_1768927	1/1	a0001	412	367	89	64	157	14	41	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	a0002	412	17	3	8	1	0	5	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	a0003	412	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	a0004	412	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSE_chr1_206004264_206028895	1/1	a0001	396	270	80	58	85	12	33	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	a0002	396	19	14	3	0	2	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	a0003	396	4	0	0	4	0	0	copy fasta	CTSE	chr1	206004264	206028895