JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ENOSF1_chr18_665318_717630	0/0	a0007	443	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	a0008	443	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	a0009	443	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	a0010	443	1	0	0	0	1	0	copy fasta	ENOSF1	chr18	665318	717630
ENOX1_chr13_43208130_43791972	1/1	a0001	643	179	65	32	64	4	12	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	a0002	643	8	8	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	a0003	643	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX2_chrX_130617325_130908209	1/1	a0001	581	148	35	25	63	5	18	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	a0002	581	3	3	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	a0003	581	2	0	0	2	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	a0004	199	1	0	0	1	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENPEP_chr4_110471155_110570285	0/0	a0001	957	153	32	20	73	8	20	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/1	a0002	957	87	24	23	25	3	11	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	1/0	a0003	957	42	11	6	17	1	6	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0004	957	10	0	0	9	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0005	957	6	6	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0006	957	3	3	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0007	957	1	0	1	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0008	957	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0009	957	1	0	0	0	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0010	957	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0011	957	1	0	0	0	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0012	957	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0013	957	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0014	957	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0015	957	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0016	957	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	a0017	957	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPP1_chr6_131803020_131900155	1/0	a0001	925	169	14	48	86	5	15	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/1	a0002	925	103	66	10	18	3	5	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0003	925	7	7	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0004	925	2	0	0	2	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0005	925	2	0	0	1	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0006	925	2	0	0	2	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0007	925	2	0	2	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0008	925	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0009	925	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0010	925	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0011	925	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	a0012	925	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP2_chr8_119552086_119643839	0/1	a0001	863	313	87	56	119	14	36	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	a0002	863	10	4	2	2	0	2	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	a0003	863	6	0	0	6	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	1/0	a0004	863	3	0	2	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	a0005	863	2	2	0	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	a0006	863	1	1	0	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	a0007	863	1	0	0	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	a0008	863	1	0	0	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	a0009	863	1	0	0	1	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	a0010	863	1	0	0	1	0	0	copy fasta	ENPP2	chr8	119552086	119643839