JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CS_chr12_56266699_56305330	0/0	c0005	1401	1	0	0	1	0	0	copy fasta	CS	chr12	56266699	56305330
CT45A10_chrX_135876065_135898444	1/0	c0001	570	193	53	25	81	6	27	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/1	c0002	570	48	6	10	26	3	2	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0003	570	4	2	0	2	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0004	570	4	4	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0005	570	2	0	1	1	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0006	570	1	0	1	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0007	570	1	1	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0008	606	1	1	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0009	570	1	0	0	1	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0010	570	1	0	0	0	0	1	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0011	570	1	1	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	c0012	570	1	0	0	1	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A1_chrX_135708639_135728228	0/0	c0001	570	38	4	8	24	1	1	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	1/0	c0002	570	16	6	1	7	0	1	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	0/0	c0003	571	1	0	0	1	0	0	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	0/0	c0004	570	1	0	0	1	0	0	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	0/0	c0005	572	1	1	0	0	0	0	copy fasta	CT45A1	chrX	135708639	135728228
CT45A2_chrX_135806668_135825012	0/0	c0001	570	22	4	8	10	0	0	copy fasta	CT45A2	chrX	135806668	135825012
CT45A3_chrX_135755044_135773191	0/0	c0001	570	132	31	30	57	2	12	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	1/0	c0002	570	24	9	4	6	2	2	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	c0003	570	1	0	0	1	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	c0004	570	1	0	1	0	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	c0005	571	1	0	0	1	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	c0006	570	1	0	1	0	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A5_chrX_135770852_135790503	0/0	c0001	570	148	35	28	60	4	21	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	c0002	570	20	6	3	11	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	c0003	570	5	5	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	c0004	570	2	0	0	0	1	1	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	c0005	569	1	1	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	c0006	569	1	0	1	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A6_chrX_135789685_135807787	0/0	c0001	570	29	8	5	9	2	5	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	c0002	570	2	2	0	0	0	0	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	c0003	570	2	1	0	0	0	1	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	c0004	566	1	0	0	0	1	0	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	c0005	569	1	0	1	0	0	0	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	c0006	573	1	0	0	0	0	1	copy fasta	CT45A6	chrX	135789685	135807787
CT45A7_chrX_135824229_135842280	0/0	c0001	570	12	0	4	7	1	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	c0002	570	3	1	1	1	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	c0003	570	2	0	1	1	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	c0004	571	1	0	0	1	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	c0005	572	1	0	1	0	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A8_chrX_135841497_135859538	0/0	c0001	570	4	1	0	3	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	c0002	570	1	0	0	1	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	c0003	570	1	1	0	0	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	c0004	570	1	0	0	0	1	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	c0005	571	1	0	0	1	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A9_chrX_135858418_135876812	0/0	c0001	570	7	1	3	2	0	1	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	c0002	570	2	0	1	1	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	c0003	570	2	2	0	0	0	0	copy fasta	CT45A9	chrX	135858418	135876812