JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CT45A9_chrX_135858418_135876812	0/0	c0004	572	1	1	0	0	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	c0005	584	1	1	0	0	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT47A10_chrX_120933701_120947023	0/0	c0001	867	6	0	0	6	0	0	copy fasta	CT47A10	chrX	120933701	120947023
CT47A10_chrX_120933701_120947023	0/0	c0002	871	1	0	0	1	0	0	copy fasta	CT47A10	chrX	120933701	120947023
CT47A1_chrX_120977476_120990760	0/0	c0001	867	234	68	41	96	8	21	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0002	867	34	0	10	15	3	6	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0003	867	20	0	3	15	0	2	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0004	867	4	0	2	2	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0005	866	1	0	0	0	0	1	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0006	867	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0007	867	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0008	868	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0009	867	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0010	866	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0011	867	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0012	867	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0013	867	1	1	0	0	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	c0014	867	1	1	0	0	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A2_chrX_120972606_120985928	0/0	c0001	867	233	60	56	85	6	26	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0002	867	4	0	0	4	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0003	867	4	0	0	4	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0004	867	3	0	0	2	0	1	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0005	867	1	0	0	0	0	1	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0006	868	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0007	868	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0008	867	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0009	867	1	1	0	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0010	868	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0011	867	1	0	0	0	0	1	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0012	867	1	1	0	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	c0013	868	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A3_chrX_120967746_120981068	0/0	c0001	867	178	54	39	54	6	25	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0002	867	4	0	1	2	0	1	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0003	867	2	2	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0004	867	2	0	0	2	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0005	867	2	2	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0006	867	2	0	2	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0007	867	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0008	868	1	0	0	1	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0009	867	1	0	0	1	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0010	867	1	0	0	1	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0011	869	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0012	867	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0013	867	1	0	0	0	0	1	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0014	867	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0015	866	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0016	867	1	0	0	0	0	1	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	c0017	903	1	0	0	0	1	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A4_chrX_120962886_120976208	0/0	c0001	867	128	48	29	32	5	14	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0002	867	16	0	2	11	0	3	copy fasta	CT47A4	chrX	120962886	120976208