JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CT47A4_chrX_120962886_120976208	0/0	c0003	867	5	5	0	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0004	867	1	1	0	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0005	867	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0006	868	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0007	868	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0008	867	1	0	1	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0009	867	1	1	0	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0010	867	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0011	866	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0012	867	1	1	0	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0013	867	1	0	1	0	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0014	868	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0015	866	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0016	867	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0017	867	1	0	0	0	1	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	c0018	871	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A5_chrX_120958026_120971348	0/0	c0001	867	103	24	29	27	8	15	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0002	867	8	3	3	2	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0003	867	7	6	1	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0004	867	2	0	1	0	0	1	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0005	867	2	0	2	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0006	867	1	0	0	0	0	1	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0007	867	1	1	0	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0008	867	1	1	0	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0009	867	1	0	0	1	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0010	867	1	0	0	1	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0011	868	1	0	1	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0012	867	1	1	0	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	c0013	867	1	1	0	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A6_chrX_120953165_120966487	0/0	c0001	867	77	20	25	15	5	12	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0002	867	10	0	4	2	2	2	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0003	867	6	5	1	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0004	867	3	0	1	2	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0005	867	2	0	2	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0006	867	2	2	0	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0007	870	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0008	864	1	1	0	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0009	867	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0010	867	1	1	0	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0011	867	1	0	0	0	0	1	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0012	867	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0013	867	1	0	1	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0014	867	1	1	0	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0015	868	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	c0016	867	1	0	0	0	1	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A7_chrX_120948282_120961600	1/0	c0001	867	18	2	1	6	2	6	copy fasta	CT47A7	chrX	120948282	120961600
CT47A7_chrX_120948282_120961600	0/0	c0002	900	1	0	0	0	1	0	copy fasta	CT47A7	chrX	120948282	120961600
CT47A8_chrX_120943422_120956744	0/0	c0001	867	5	0	0	3	1	1	copy fasta	CT47A8	chrX	120943422	120956744
CT47A8_chrX_120943422_120956744	0/0	c0002	868	1	0	0	0	0	1	copy fasta	CT47A8	chrX	120943422	120956744
CT47A8_chrX_120943422_120956744	0/0	c0003	867	1	0	0	1	0	0	copy fasta	CT47A8	chrX	120943422	120956744