JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENPEP_chr4_110471155_110570285	0/0	c0007	2874	2	2	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0008	2874	2	2	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0009	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0010	2874	1	0	1	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0011	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0012	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0013	2874	1	0	0	0	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0014	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0015	2874	1	0	0	0	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0016	2874	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0017	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0018	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0019	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0020	2874	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0021	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0022	2874	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPP1_chr6_131803020_131900155	1/0	c0001	2778	162	11	47	86	5	12	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/1	c0002	2778	79	42	10	18	3	5	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0003	2778	7	7	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0004	2778	7	7	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0005	2778	6	6	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0006	2778	4	4	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0007	2778	3	1	0	0	0	2	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0008	2778	3	3	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0009	2778	2	0	2	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0010	2778	2	2	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0011	2778	2	0	0	2	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0012	2778	2	0	0	1	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0013	2778	2	0	0	2	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0014	2778	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0015	2778	1	0	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0016	2778	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0017	2778	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0018	2778	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0019	2778	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0020	2778	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0021	2778	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0022	2778	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0023	2778	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	c0024	2778	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP2_chr8_119552086_119643839	0/1	c0001	2592	182	28	35	89	10	19	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0002	2592	52	29	6	13	0	4	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0003	2592	26	2	7	12	0	5	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0004	2592	24	23	0	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0005	2592	12	0	4	3	1	4	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0006	2592	8	0	3	1	2	2	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0007	2592	6	4	1	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0008	2592	6	0	0	6	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0009	2592	3	3	0	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	1/0	c0010	2592	3	0	2	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839