JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXL13_chr7_102806189_103079796	0/0	c0016	2478	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0017	2478	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0018	2478	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0019	2478	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0020	2478	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0021	2478	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0022	2478	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0023	2478	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	c0024	2478	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL14_chr12_1560993_1599581	1/1	c0001	1257	346	68	70	148	16	42	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	c0002	1257	32	16	0	15	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	c0003	1257	15	13	1	0	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	c0004	1257	13	0	3	8	0	2	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	c0005	1257	8	0	0	8	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	c0006	1257	2	2	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	c0007	1257	1	1	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	c0008	1281	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL15_chr10_102415836_102428136	1/1	c0001	903	365	82	72	158	11	40	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	c0002	903	1	0	0	0	1	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	c0003	903	1	1	0	0	0	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	c0004	903	1	1	0	0	0	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL16_chr16_687500_710801	1/1	c0001	1440	223	82	54	51	7	27	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	c0002	1440	148	14	22	86	3	23	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	c0003	1440	1	0	0	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL17_chr5_107854035_108387098	1/0	c0001	2106	175	39	41	69	11	14	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/1	c0002	2106	26	4	3	7	3	8	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0003	2106	8	8	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0004	2106	7	6	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0005	2106	6	5	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0006	2106	5	4	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0007	2109	3	2	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0008	2106	2	0	2	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0009	2106	2	1	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0010	2106	2	2	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0011	2106	2	0	0	2	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0012	2106	2	2	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0013	2106	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0014	2106	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0015	2106	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	c0016	2106	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL18_chr7_5470797_5518809	0/1	c0001	2157	135	41	23	56	7	7	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0002	2157	78	9	20	34	2	13	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0003	2157	25	6	13	2	0	4	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0004	2158	24	4	6	10	0	4	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	1/0	c0005	2157	20	0	5	4	3	7	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0006	2158	10	1	3	5	1	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0007	2157	9	8	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0008	2157	4	1	1	0	0	2	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0009	2157	4	4	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0010	2157	4	4	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809