JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAGE12J_chrX_49317037_49334384	0/0	c0012	354	1	0	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0013	355	1	0	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0014	354	1	0	0	1	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE13_chrX_49326582_49343949	0/0	c0001	351	29	5	9	9	1	5	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	c0002	351	23	5	4	8	0	6	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	c0003	354	22	0	1	10	1	10	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	c0004	351	11	9	0	2	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	c0005	354	3	0	2	1	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	c0006	354	2	0	2	0	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	c0007	351	1	0	0	1	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	1/0	c0008	354	1	0	0	0	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	c0009	352	1	0	0	1	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE1_chrX_49594020_49613538	1/0	c0001	354	193	67	32	75	4	14	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/1	c0002	351	98	4	22	51	6	14	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0003	351	7	1	1	2	0	3	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0004	354	4	2	0	2	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0005	354	2	1	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0006	351	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0007	354	1	0	0	0	1	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0008	354	1	0	1	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0009	354	1	0	0	0	0	1	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0010	354	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0011	352	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	c0012	354	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE2A_chrX_49584496_49601824	0/0	c0001	351	53	2	13	25	3	10	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0002	354	32	10	8	8	1	5	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	1/0	c0003	351	20	8	2	9	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0004	354	10	9	1	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0005	354	8	3	1	4	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0006	354	2	1	1	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0007	351	1	0	0	0	1	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0008	364	1	0	0	1	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0009	354	1	1	0	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0010	354	1	1	0	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	c0011	353	1	0	1	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAK_chr4_844277_937316	0/0	c0001	3936	135	25	26	61	3	20	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0002	3936	46	17	4	23	1	1	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0003	3936	34	0	8	22	2	2	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0004	3936	32	1	4	15	2	10	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0005	3936	26	9	7	4	2	4	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/1	c0006	3936	23	0	3	19	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	1/0	c0007	3936	16	0	13	0	2	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0008	3936	9	9	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0009	3936	6	6	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0010	3936	6	0	5	0	1	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0011	3936	4	4	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0012	3936	4	0	2	0	0	2	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0013	3936	4	4	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0014	3936	3	3	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0015	3936	3	3	0	0	0	0	copy fasta	GAK	chr4	844277	937316