JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSFX4_chrX_149924573_149936287	0/0	c0008	1002	1	0	0	1	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0009	1003	1	0	0	1	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0010	1002	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0011	1002	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0012	1002	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0013	1002	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0014	1002	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0015	1002	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFY1_chrY_18541720_18553592	0/0	c0001	1206	46	8	7	20	2	9	copy fasta	HSFY1	chrY	18541720	18553592
HSFY1_chrY_18541720_18553592	0/0	c0002	1209	1	0	0	1	0	0	copy fasta	HSFY1	chrY	18541720	18553592
HSFY1_chrY_18541720_18553592	0/0	c0003	1205	1	0	0	1	0	0	copy fasta	HSFY1	chrY	18541720	18553592
HSFY1_chrY_18541720_18553592	0/0	c0004	1204	1	0	1	0	0	0	copy fasta	HSFY1	chrY	18541720	18553592
HSFY1_chrY_18541720_18553592	0/0	c0005	1204	1	0	0	0	0	1	copy fasta	HSFY1	chrY	18541720	18553592
HSFY2_chrY_18766814_18778735	0/0	c0001	1206	66	9	5	41	2	9	copy fasta	HSFY2	chrY	18766814	18778735
HSFY2_chrY_18766814_18778735	0/0	c0002	1206	1	1	0	0	0	0	copy fasta	HSFY2	chrY	18766814	18778735
HSH2D_chr19_16138685_16163575	1/1	c0001	1059	333	53	62	170	9	37	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0002	1059	29	19	4	1	3	2	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0003	1059	20	14	3	3	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0004	1059	4	4	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0005	1059	2	2	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0006	1059	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0007	1059	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0008	1059	1	0	0	0	0	1	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0009	1059	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0010	1059	1	0	1	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	c0011	1059	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSP90AA1_chr14_102075742_102092044	0/1	c0001	2199	246	25	54	121	14	31	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	1/0	c0002	2199	111	53	13	38	1	5	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0003	2199	20	5	1	13	0	1	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0004	2199	5	4	1	0	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0005	2196	3	0	0	3	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0006	2199	2	2	0	0	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0007	2199	2	0	0	2	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0008	2199	1	1	0	0	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0009	2199	1	1	0	0	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0010	2199	1	0	1	0	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0011	2199	1	0	0	1	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0012	2199	1	0	0	1	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0013	2199	1	0	0	0	0	1	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0014	2199	1	0	0	1	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0015	2199	1	0	0	0	1	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AA1_chr14_102075742_102092044	0/0	c0016	2199	1	1	0	0	0	0	copy fasta	HSP90AA1	chr14	102075742	102092044
HSP90AB1_chr6_44242101_44258883	0/1	c0001	2175	286	72	53	125	9	26	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	1/0	c0002	2175	125	14	27	56	6	21	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0003	2175	5	5	0	0	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0004	2175	3	3	0	0	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0005	2175	2	0	2	0	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0006	2175	2	2	0	0	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0007	2175	2	0	0	2	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0008	2175	1	0	0	1	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883