JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LCE2B_chr1_152681123_152692397	1/1	c0001	333	334	53	74	154	16	35	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0002	333	84	15	9	51	0	9	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0003	333	11	11	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0004	333	4	4	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0005	333	4	4	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0006	333	3	3	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0007	333	2	2	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0008	333	1	1	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0009	333	1	0	1	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0010	333	1	1	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	c0011	333	1	0	0	1	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2C_chr1_152670279_152681569	1/1	c0001	333	398	68	82	186	18	42	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	c0002	333	16	16	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	c0003	333	4	4	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	c0004	11159	3	3	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	c0005	11159	2	2	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	c0006	333	1	0	0	1	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	c0007	309	1	1	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	c0008	333	1	0	0	1	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2D_chr1_152658380_152669659	1/1	c0001	333	323	74	58	139	12	38	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	c0002	333	30	2	11	9	6	2	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	c0003	333	16	16	0	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	c0004	333	3	3	0	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	c0005	333	1	0	1	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	c0006	333	1	1	0	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE3A_chr1_152617834_152628103	1/1	c0001	270	397	77	78	188	12	40	copy fasta	LCE3A	chr1	152617834	152628103
LCE3A_chr1_152617834_152628103	0/0	c0002	270	11	11	0	0	0	0	copy fasta	LCE3A	chr1	152617834	152628103
LCE3A_chr1_152617834_152628103	0/0	c0003	270	1	0	0	1	0	0	copy fasta	LCE3A	chr1	152617834	152628103
LCE3A_chr1_152617834_152628103	0/0	c0004	270	1	0	0	1	0	0	copy fasta	LCE3A	chr1	152617834	152628103
LCE3B_chr1_152608811_152619098	1/1	c0001	288	259	77	44	100	8	28	copy fasta	LCE3B	chr1	152608811	152619098
LCE3B_chr1_152608811_152619098	0/0	c0002	288	1	1	0	0	0	0	copy fasta	LCE3B	chr1	152608811	152619098
LCE3C_chr1_152595234_152606086	1/1	c0001	285	53	23	4	20	2	2	copy fasta	LCE3C	chr1	152595234	152606086
LCE3C_chr1_152595234_152606086	0/0	c0002	285	3	3	0	0	0	0	copy fasta	LCE3C	chr1	152595234	152606086
LCE3C_chr1_152595234_152606086	0/0	c0003	285	2	2	0	0	0	0	copy fasta	LCE3C	chr1	152595234	152606086
LCE3D_chr1_152574381_152585516	1/1	c0001	279	253	67	45	102	7	30	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	c0002	279	76	13	15	33	3	12	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	c0003	279	4	4	0	0	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	c0004	279	4	4	0	0	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	c0005	279	2	0	0	2	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	c0006	279	1	1	0	0	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	c0007	279	1	0	0	1	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	c0008	279	1	1	0	0	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3E_chr1_152560654_152571780	1/1	c0001	279	455	94	71	226	16	46	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	c0002	279	2	2	0	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	c0003	279	1	0	1	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	c0004	279	1	1	0	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	c0005	279	1	1	0	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	c0006	279	1	0	0	1	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	c0007	279	1	0	0	1	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE4A_chr1_152703160_152714434	0/0	c0001	318	247	61	47	107	11	21	copy fasta	LCE4A	chr1	152703160	152714434