JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRTM1_chr2_80296878_80309752	0/0	c0004	1569	7	0	0	7	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0005	1569	5	5	0	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0006	1569	5	4	1	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0007	1569	4	0	0	4	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0008	1569	2	2	0	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0009	1569	2	0	0	0	0	2	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0010	1569	1	0	0	0	1	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0011	1569	1	1	0	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0012	1569	1	0	0	1	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0013	1569	1	0	0	1	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM2_chr5_138863921_138880335	1/1	c0001	1551	354	86	73	137	16	40	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	c0002	1551	3	0	0	3	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	c0003	1551	2	0	0	2	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	c0004	1551	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	c0005	1551	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	c0006	1551	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	c0007	1551	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	c0008	1551	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM3_chr10_66921036_67106551	1/1	c0001	1746	266	80	51	87	14	32	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	c0002	1746	18	1	2	15	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	c0003	1746	8	8	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	c0004	1746	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	c0005	1746	1	0	1	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM4_chr2_76742685_77527376	0/0	c0001	1773	128	58	16	34	2	18	copy fasta	LRRTM4	chr2	76742685	77527376
LRSAM1_chr9_127446510_127508499	0/1	c0001	2172	163	35	31	73	7	16	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	1/0	c0002	2172	99	30	19	35	4	10	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0003	2172	51	4	14	22	5	6	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0004	2172	9	9	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0005	2172	3	2	0	0	0	1	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0006	2172	3	0	0	3	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0007	2172	3	2	1	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0008	2172	1	1	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0009	2172	1	0	0	1	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0010	2172	1	0	1	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0011	2172	1	1	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0012	2172	1	1	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0013	2172	1	0	0	1	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0014	2172	1	0	0	1	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0015	2172	1	1	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	c0016	2172	1	0	0	0	0	1	copy fasta	LRSAM1	chr9	127446510	127508499
LRTM1_chr3_54913231_54933059	1/1	c0001	1038	308	59	65	125	16	41	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0002	1038	10	10	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0003	1038	10	10	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0004	1038	3	0	0	3	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0005	1038	3	3	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0006	1038	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0007	1038	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0008	1038	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0009	1038	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0010	1038	1	0	0	1	0	0	copy fasta	LRTM1	chr3	54913231	54933059