JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEC3_chrX_141833316_141902832	0/0	c0037	1932	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0038	1932	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0039	1932	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0040	1931	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0041	1932	1	0	1	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0042	1932	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0043	1932	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0044	1932	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0045	1932	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0046	1932	1	0	0	0	0	1	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0047	1932	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGED1_chrX_51888623_51907354	1/0	c0001	2337	237	69	39	100	10	18	copy fasta	MAGED1	chrX	51888623	51907354
MAGED1_chrX_51888623_51907354	0/1	c0002	2337	23	5	8	5	1	3	copy fasta	MAGED1	chrX	51888623	51907354
MAGED1_chrX_51888623_51907354	0/0	c0003	2337	2	0	0	2	0	0	copy fasta	MAGED1	chrX	51888623	51907354
MAGED1_chrX_51888623_51907354	0/0	c0004	2337	1	1	0	0	0	0	copy fasta	MAGED1	chrX	51888623	51907354
MAGED1_chrX_51888623_51907354	0/0	c0005	2337	1	1	0	0	0	0	copy fasta	MAGED1	chrX	51888623	51907354
MAGED1_chrX_51888623_51907354	0/0	c0006	2376	1	0	0	1	0	0	copy fasta	MAGED1	chrX	51888623	51907354
MAGED2_chrX_54802745_54821015	0/0	c0001	1821	148	26	18	83	5	16	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	1/1	c0002	1821	125	23	31	49	6	14	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0003	1821	16	16	0	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0004	1821	9	0	9	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0005	1821	7	7	0	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0006	1821	4	3	1	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0007	1821	3	0	0	3	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0008	1821	1	1	0	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0009	1821	1	1	0	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0010	1821	1	1	0	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0011	1820	1	0	0	1	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0012	1822	1	0	0	1	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0013	1820	1	0	1	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	c0014	1821	1	0	0	1	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED4B_chrX_52056827_52074183	0/0	c0001	2226	199	46	37	85	11	20	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0002	2226	6	6	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0003	2227	2	0	0	2	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0004	2226	1	0	1	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0005	2227	1	0	0	1	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0006	2226	1	1	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0007	2226	1	0	0	1	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0008	2226	1	1	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0009	2226	1	0	1	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0010	2227	1	0	0	1	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0011	2226	1	0	0	1	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	c0012	2226	1	1	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4_chrX_52179888_52197268	0/0	c0001	2226	191	43	42	85	4	17	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0002	2226	5	5	0	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0003	2227	4	1	1	0	0	2	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0004	2226	4	3	1	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0005	2226	3	0	0	3	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0006	2231	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0007	2227	1	0	0	0	0	1	copy fasta	MAGED4	chrX	52179888	52197268