JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MANBA_chr4_102625770_102765968	0/0	c0016	2640	1	0	1	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0017	2640	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANEAL_chr1_37788847_37806133	1/1	c0001	1374	416	82	67	208	13	44	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0002	1374	6	5	1	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0003	1377	5	0	0	5	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0004	1374	2	0	1	0	1	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0005	1374	2	0	0	2	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0006	1374	2	2	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0007	1374	1	0	0	1	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0008	1312	1	1	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0009	1374	1	0	1	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0010	1374	1	1	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	c0011	1374	1	1	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEA_chr6_95572535_95614452	1/1	c0001	1389	354	71	64	181	8	28	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0002	1389	24	0	8	15	0	1	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0003	1389	14	9	3	0	2	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0004	1389	6	6	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0005	1389	2	0	0	0	0	2	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0006	1389	2	0	0	0	2	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0007	1389	2	0	0	0	1	1	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0008	1389	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0009	1389	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0010	1389	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0011	1389	1	0	0	0	1	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0012	1389	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	c0013	1389	1	0	1	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANF_chr3_51380291_51394397	1/1	c0001	549	379	78	68	184	14	33	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	c0002	549	5	0	0	0	0	5	copy fasta	MANF	chr3	51380291	51394397
MANSC1_chr12_12321056_12355242	1/0	c0001	1296	144	20	20	90	2	11	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/1	c0002	1296	129	21	37	53	6	11	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0003	1296	18	0	7	5	4	2	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0004	1296	8	0	0	8	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0005	1296	7	6	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0006	1296	4	0	0	4	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0007	1296	3	0	0	3	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0008	1296	2	0	1	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0009	1296	2	2	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0010	1296	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0011	1312	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0012	1296	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0013	1296	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	c0014	1296	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC4_chr12_27757427_27785236	0/0	c0001	1023	173	39	38	71	6	19	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	1/1	c0002	1023	164	46	26	69	7	14	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	c0003	1023	65	1	9	46	3	6	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	c0004	1023	1	0	1	0	0	0	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	c0005	1023	1	0	0	1	0	0	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	c0006	1023	1	0	0	0	0	1	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	c0007	1023	1	0	0	1	0	0	copy fasta	MANSC4	chr12	27757427	27785236
MAOA_chrX_43651299_43751817	1/0	c0001	1584	133	16	16	78	5	17	copy fasta	MAOA	chrX	43651299	43751817