JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MZT1_chr13_72703367_72732629	0/0	c0004	249	4	4	0	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	c0005	249	2	0	2	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT2A_chr2_131478960_131497397	1/1	c0001	477	337	53	66	156	14	46	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0002	476	21	14	4	0	0	3	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0003	477	10	9	1	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0004	476	5	4	0	0	0	1	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0005	477	4	4	0	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0006	476	4	3	1	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0007	477	2	0	2	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0008	477	2	2	0	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0009	476	2	1	1	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0010	476	2	1	1	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	c0011	477	1	1	0	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2B_chr2_130177262_130195727	1/1	c0001	477	398	95	74	161	18	48	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	c0002	477	4	0	0	4	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	c0003	477	2	2	0	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	c0004	477	1	0	0	1	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	c0005	477	1	0	1	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	c0006	477	1	0	1	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	c0007	477	1	1	0	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
N4BP1_chr16_48533726_48615180	1/1	c0001	2691	303	67	57	132	14	31	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	c0002	2691	9	9	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	c0003	2691	4	0	1	3	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	c0004	2691	3	3	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	c0005	2691	2	2	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	c0006	2691	1	0	0	0	0	1	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	c0007	2691	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	c0008	2691	1	0	0	1	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP2L1_chr13_32395723_32433130	1/1	c0001	732	430	92	72	206	12	46	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L2_chr13_32505292_32543795	1/1	c0001	1752	362	69	66	170	12	43	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0002	1752	16	15	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0003	1752	4	3	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0004	1752	3	3	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0005	1752	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0006	1752	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0007	1752	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0008	1752	1	0	0	0	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0009	1752	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0010	1752	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0011	1752	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0012	1752	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	c0013	1752	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2_chr4_40051850_40163252	0/0	c0001	5313	142	34	23	68	2	15	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0002	5313	71	3	3	57	1	7	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	1/1	c0003	5313	51	24	14	6	3	2	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0004	5313	30	1	17	3	4	5	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0005	5313	20	3	3	11	0	3	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0006	5313	14	13	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0007	5313	7	7	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0008	5313	4	4	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252